Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   QMY43_RS08810 Genome accession   NZ_CP125856
Coordinates   1879107..1880111 (-) Length   334 a.a.
NCBI ID   WP_005457270.1    Uniprot ID   Q87QU7
Organism   Vibrio parahaemolyticus strain G855     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1874107..1885111
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMY43_RS08780 (QMY43_08780) tolQ 1874211..1874909 (-) 699 WP_005485405.1 protein TolQ -
  QMY43_RS08785 (QMY43_08785) ybgC 1874899..1875318 (-) 420 WP_005483618.1 tol-pal system-associated acyl-CoA thioesterase -
  QMY43_RS08790 (QMY43_08790) ybgE 1875491..1875793 (-) 303 WP_140103914.1 cyd operon protein YbgE -
  QMY43_RS08795 (QMY43_08795) cydX 1875786..1875893 (-) 108 WP_000270284.1 cytochrome bd-I oxidase subunit CydX -
  QMY43_RS08800 (QMY43_08800) cydB 1875906..1877042 (-) 1137 WP_005483614.1 cytochrome d ubiquinol oxidase subunit II -
  QMY43_RS08805 (QMY43_08805) cydA 1877060..1878646 (-) 1587 WP_005457265.1 cytochrome ubiquinol oxidase subunit I -
  QMY43_RS08810 (QMY43_08810) ruvB 1879107..1880111 (-) 1005 WP_005457270.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  QMY43_RS08815 (QMY43_08815) ruvA 1880133..1880747 (-) 615 WP_140054729.1 Holliday junction branch migration protein RuvA -
  QMY43_RS08820 (QMY43_08820) - 1880826..1882277 (-) 1452 WP_159404155.1 methyl-accepting chemotaxis protein -
  QMY43_RS08825 (QMY43_08825) ruvC 1882399..1882920 (-) 522 WP_005457261.1 crossover junction endodeoxyribonuclease RuvC -
  QMY43_RS08830 (QMY43_08830) aspS 1883049..1884827 (-) 1779 WP_140103847.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 37226.63 Da        Isoelectric Point: 4.7025

>NTDB_id=764272 QMY43_RS08810 WP_005457270.1 1879107..1880111(-) (ruvB) [Vibrio parahaemolyticus strain G855]
MIEADRLIAPENPAFRDEDVIDRAIRPKKLADYQGQDHVRDQMEIFIKAAQLRSEALDHLLIFGPPGLGKTTLANIVANE
MEVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLI
GATTRAGSLTSPLRDRFGITQRLEYYKVQDLQNIVQRSADCLGLSMEPEGALEVARRARGTPRIANRLLRRVRDYAEVKG
NGHICADVADKALNMLDVDAQGFDYMDRKLLLAIMEKFGGGPVGLDNMAAAIGEEKDTIEDVLEPYLIQQGYLQRTPRGR
IATDRAYLHFGIEK

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=764272 QMY43_RS08810 WP_005457270.1 1879107..1880111(-) (ruvB) [Vibrio parahaemolyticus strain G855]
ATGATTGAAGCCGATCGTTTAATCGCTCCTGAAAATCCAGCGTTTCGTGATGAAGATGTTATTGACCGTGCTATTCGCCC
TAAAAAGTTGGCGGATTACCAAGGTCAGGATCATGTCCGTGATCAGATGGAGATTTTCATCAAAGCGGCACAATTGCGTA
GTGAGGCGTTGGACCACCTACTTATTTTTGGCCCTCCAGGTTTGGGTAAAACGACGTTGGCAAACATTGTTGCTAACGAG
ATGGAAGTGAACATCCGTACTACTTCTGGACCTGTTCTCGAAAAAGCAGGCGATTTGGCCGCGTTGTTGACCAACCTTGA
GGAAAACGACGTGCTTTTCATTGATGAGATCCATCGTCTTAGCCCTATGGTCGAAGAGGTGCTGTATCCGGCAATGGAAG
ATTACCAATTGGACATCATGATTGGTGAAGGCCCGGCCGCACGTTCTATCAAAATTGATTTGCCACCATTCACATTGATT
GGTGCAACGACGCGTGCGGGGTCTTTGACTTCTCCGCTGCGTGACCGTTTTGGTATTACTCAGCGTCTTGAGTACTACAA
AGTGCAAGATCTACAGAACATTGTTCAACGCAGTGCAGATTGTCTAGGGTTGTCGATGGAGCCAGAAGGCGCGTTAGAAG
TTGCTCGACGAGCTCGTGGTACGCCTCGTATTGCAAACCGTCTATTGCGCCGTGTCCGTGACTATGCAGAAGTGAAGGGC
AACGGACATATTTGTGCCGATGTTGCTGACAAAGCGCTTAATATGTTGGATGTGGATGCTCAGGGCTTCGATTACATGGA
CCGCAAGCTTCTTCTCGCTATCATGGAGAAATTTGGTGGTGGTCCAGTTGGACTCGACAATATGGCTGCCGCTATTGGTG
AAGAAAAAGACACCATTGAAGATGTGCTAGAACCATATTTGATTCAGCAAGGCTATTTACAACGCACTCCCCGAGGAAGA
ATCGCCACAGATCGTGCATATCTTCATTTCGGAATTGAAAAATAA

Domains

Predicted by InterProScan.

RuvB AAA lid domain (AAA_lid_4)

(186-259)

RuvB C-terminal winged helix domain (WHD_RuvB)

(261-330)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(25-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87QU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

60.486

98.503

0.596
  ruvB Streptococcus pneumoniae TIGR4

58.824

96.707

0.569
  ruvB Streptococcus pneumoniae R6

58.824

96.707

0.569
  ruvB Streptococcus pneumoniae D39

58.824

96.707

0.569
  ruvB Synechocystis sp. PCC 6803

55.987

92.515

0.518
  ruvB Helicobacter pylori 26695

54.276

91.018

0.494