Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   O0N60_RS13710 Genome accession   NZ_CP114039
Coordinates   3272500..3273006 (+) Length   168 a.a.
NCBI ID   WP_206799547.1    Uniprot ID   -
Organism   Corallococcus sp. NCRR     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3267500..3278006
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O0N60_RS13700 (O0N60_13700) - 3268267..3269865 (-) 1599 WP_206799549.1 ABC transporter substrate-binding protein -
  O0N60_RS13705 (O0N60_13705) dacB 3269973..3272237 (+) 2265 WP_206799548.1 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase -
  O0N60_RS13710 (O0N60_13710) ssb 3272500..3273006 (+) 507 WP_206799547.1 single-stranded DNA-binding protein Machinery gene
  O0N60_RS13715 (O0N60_13715) - 3273121..3273804 (-) 684 WP_206799546.1 succinate dehydrogenase -
  O0N60_RS13720 (O0N60_13720) - 3274077..3274970 (+) 894 WP_206799545.1 Hsp33 family molecular chaperone HslO -
  O0N60_RS13725 (O0N60_13725) - 3275105..3275800 (+) 696 WP_206799544.1 phosphoribosyltransferase family protein -
  O0N60_RS13730 (O0N60_13730) selB 3275829..3277757 (+) 1929 WP_206799542.1 selenocysteine-specific translation elongation factor -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18065.86 Da        Isoelectric Point: 5.8010

>NTDB_id=764220 O0N60_RS13710 WP_206799547.1 3272500..3273006(+) (ssb) [Corallococcus sp. NCRR]
MAGGVNKVILIGNLGADPEVRFTPGGQAVANFRIATSESWNDKNGQKQERTEWHRIVVWGKLAELCGEYLKKGRQCFVEG
RLQTREWMDKENKKNYTTEVVATSVTFLGGRDAGEGYSGGNGGGRRQQQGGNGGYGQGRDDYGQPPPPMDDGGGMGGNHG
GADDDIPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=764220 O0N60_RS13710 WP_206799547.1 3272500..3273006(+) (ssb) [Corallococcus sp. NCRR]
ATGGCTGGAGGCGTGAACAAGGTCATTCTCATCGGCAACCTCGGGGCGGACCCCGAAGTGCGCTTCACCCCGGGCGGTCA
GGCCGTGGCGAACTTCCGCATCGCGACGAGCGAGAGCTGGAACGACAAGAACGGCCAGAAGCAGGAGCGCACCGAGTGGC
ACCGCATCGTCGTCTGGGGAAAGCTCGCGGAGCTGTGCGGCGAGTACCTCAAGAAGGGACGGCAGTGCTTCGTCGAAGGC
CGTCTGCAGACGCGCGAGTGGATGGATAAGGAGAACAAGAAGAACTACACCACCGAGGTCGTCGCCACCTCCGTCACCTT
CCTCGGCGGCCGTGACGCCGGTGAGGGCTACAGCGGCGGCAATGGCGGTGGGCGCCGGCAGCAGCAGGGCGGCAACGGCG
GCTACGGTCAGGGGCGTGACGACTACGGTCAGCCGCCGCCTCCCATGGATGACGGTGGCGGCATGGGCGGCAACCACGGC
GGCGCGGACGACGACATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

47.283

100

0.518
  ssb Glaesserella parasuis strain SC1401

43.333

100

0.464
  ssb Neisseria meningitidis MC58

41.848

100

0.458
  ssb Neisseria gonorrhoeae MS11

47.887

84.524

0.405