Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   QMY17_RS21860 Genome accession   NZ_CP125812
Coordinates   4092968..4093198 (-) Length   76 a.a.
NCBI ID   WP_003243417.1    Uniprot ID   A0ABU0VCT2
Organism   Bacillus subtilis strain N3378-3At     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4087968..4098198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMY17_RS21850 spoVT 4088693..4089229 (-) 537 WP_003218365.1 stage V sporulation protein T -
  QMY17_RS21855 mfd 4089365..4092898 (-) 3534 WP_014478601.1 transcription-repair coupling factor -
  QMY17_RS21860 subA/fin 4092968..4093198 (-) 231 WP_003243417.1 anti-sigma-F factor Fin Machinery gene
  QMY17_RS21865 pth 4093258..4093824 (-) 567 WP_003226727.1 aminoacyl-tRNA hydrolase -
  QMY17_RS21870 rplYB 4093931..4094545 (-) 615 WP_003243443.1 50S ribosomal protein L25/general stress protein Ctc -
  QMY17_RS21875 prsS 4094630..4095583 (-) 954 WP_014478600.1 ribose-phosphate diphosphokinase -
  QMY17_RS21880 glmU 4095606..4096976 (-) 1371 WP_014478599.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  QMY17_RS21885 spoVG 4097169..4097462 (-) 294 WP_003218346.1 septation regulator SpoVG -
  QMY17_RS21890 ridA 4097657..4098034 (-) 378 WP_003226738.1 2-iminobutanoate/2-iminopropanoate deaminase -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8847.81 Da        Isoelectric Point: 5.3895

>NTDB_id=764220 QMY17_RS21860 WP_003243417.1 4092968..4093198(-) (subA/fin) [Bacillus subtilis strain N3378-3At]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=764220 QMY17_RS21860 WP_003243417.1 4092968..4093198(-) (subA/fin) [Bacillus subtilis strain N3378-3At]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGACTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAAGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGACTGCCAAGAGGCGCTTGACCGAAATCCGCATTACCACGAATATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

100

100

1