Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   QMY17_RS07905 Genome accession   NZ_CP125812
Coordinates   1517946..1518641 (+) Length   231 a.a.
NCBI ID   WP_014480455.1    Uniprot ID   -
Organism   Bacillus subtilis strain N3378-3At     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1512946..1523641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMY17_RS07885 folC 1513877..1515169 (+) 1293 WP_014480460.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  QMY17_RS07890 comC 1515309..1516055 (+) 747 WP_072592551.1 prepilin peptidase Machinery gene
  QMY17_RS07895 spoIIB 1516189..1517187 (+) 999 WP_014480457.1 stage II sporulation protein SpoIIB -
  QMY17_RS07900 maf 1517340..1517909 (+) 570 WP_014480456.1 Maf family nucleotide pyrophosphatase -
  QMY17_RS07905 ysxA/radC 1517946..1518641 (+) 696 WP_014480455.1 RadC family protein Machinery gene
  QMY17_RS07910 mreB 1518733..1519746 (+) 1014 WP_003229650.1 cell shape-determining protein MreB -
  QMY17_RS07915 mreC 1519777..1520649 (+) 873 WP_003222609.1 rod shape-determining protein MreC -
  QMY17_RS07920 mreD 1520646..1521164 (+) 519 WP_004398811.1 rod shape-determining protein MreD -
  QMY17_RS07925 minC 1521217..1521897 (+) 681 WP_004398901.1 septum site-determining protein MinC -
  QMY17_RS07930 minD 1521899..1522705 (+) 807 WP_014480454.1 septum site-determining protein MinD -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26128.44 Da        Isoelectric Point: 7.9285

>NTDB_id=764118 QMY17_RS07905 WP_014480455.1 1517946..1518641(+) (ysxA/radC) [Bacillus subtilis strain N3378-3At]
MVIHDLPLKLKDFPIKEKPRERLLKVGAENLANHELLAILLRTGTKHESVLDLSNRLLRSFDGLRLLKEASVEELSSIPG
IGMVKAIQILAAVELGSRIHKLANEEHFVIRSPEDGANLVMEDMRFLTQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=764118 QMY17_RS07905 WP_014480455.1 1517946..1518641(+) (ysxA/radC) [Bacillus subtilis strain N3378-3At]
TTGGTCATACACGATCTGCCATTAAAACTCAAAGATTTCCCAATCAAAGAAAAGCCAAGAGAACGGCTCCTGAAAGTCGG
AGCCGAGAACTTAGCGAATCATGAACTTTTGGCTATATTATTGCGGACAGGGACTAAACACGAATCTGTTTTGGACCTGT
CAAACCGGCTGCTGCGCTCATTTGACGGGCTGCGCCTGCTCAAGGAAGCATCGGTTGAAGAGCTGTCGAGCATCCCGGGA
ATCGGTATGGTAAAAGCGATTCAAATACTGGCTGCAGTTGAGCTTGGAAGCCGGATTCATAAATTAGCCAACGAAGAACA
TTTCGTTATTCGCTCCCCGGAAGACGGCGCTAATCTTGTCATGGAGGATATGCGCTTTTTAACCCAGGAGCATTTTGTCT
GTTTATACTTAAATACAAAAAATCAAGTCATCCATAAACGCACCGTATTTATCGGAAGCCTGAATTCATCTATTGTCCAC
CCGCGAGAGGTGTTTAAAGAAGCGTTTAAACGATCTGCCGCTTCCTTTATCTGTGTTCATAATCATCCTTCTGGAGATCC
GACGCCGAGCAGGGAAGATATTGAAGTGACAAGACGGCTGTTTGAATGCGGAAACCTGATTGGCATCGAGCTGCTTGACC
ATTTGGTGATCGGGGATAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(110-229)

UPF0758 N-terminal (UPF0758_N)

(11-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

99.567

100

0.996
  radC Streptococcus pneumoniae TIGR4

48.095

90.909

0.437
  radC Streptococcus pneumoniae R6

47.619

90.909

0.433
  radC Streptococcus pneumoniae D39

47.619

90.909

0.433
  radC Streptococcus gordonii str. Challis substr. CH1

46.667

90.909

0.424