Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QMO65_RS23390 Genome accession   NZ_CP125780
Coordinates   4988019..4988516 (-) Length   165 a.a.
NCBI ID   WP_003114685.1    Uniprot ID   A0A0H2ZGD4
Organism   Pseudomonas aeruginosa strain HPHA13     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4983019..4993516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMO65_RS23370 (QMO65_23365) pchD 4983803..4985446 (+) 1644 WP_009877104.1 pyochelin biosynthesis salicyl-AMP ligase PchD -
  QMO65_RS23375 (QMO65_23370) pchC 4985443..4986198 (+) 756 WP_009877105.1 pyochelin biosynthesis editing thioesterase PchC -
  QMO65_RS23380 (QMO65_23375) pchB 4986198..4986503 (+) 306 WP_009877106.1 isochorismate lyase PchB -
  QMO65_RS23385 (QMO65_23380) pchA 4986500..4987930 (+) 1431 WP_003114686.1 isochorismate synthase PchA -
  QMO65_RS23390 (QMO65_23385) ssb 4988019..4988516 (-) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  QMO65_RS23395 (QMO65_23390) - 4988533..4989921 (-) 1389 WP_003103910.1 MFS transporter -
  QMO65_RS23400 (QMO65_23395) uvrA 4990135..4992972 (+) 2838 WP_019726773.1 excinuclease ABC subunit UvrA Machinery gene
  QMO65_RS23405 (QMO65_23400) bfr 4993044..4993508 (-) 465 WP_003093668.1 bacterioferritin -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18557.46 Da        Isoelectric Point: 5.2781

>NTDB_id=764031 QMO65_RS23390 WP_003114685.1 4988019..4988516(-) (ssb) [Pseudomonas aeruginosa strain HPHA13]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=764031 QMO65_RS23390 WP_003114685.1 4988019..4988516(-) (ssb) [Pseudomonas aeruginosa strain HPHA13]
ATGGCCCGTGGGGTTAACAAAGTCATTCTAGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGCCAGGATGGTCAGGATCGCTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGTTGCTCGGCGGCCGCCCCTCCGGCGACGATTCGCAGCGCGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAGCAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGCCGCAACCGGCCCAGGACTACGACAGCTTCGAC
GACGACATTCCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZGD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.636
  ssb Glaesserella parasuis strain SC1401

52.486

100

0.576
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.521
  ssb Neisseria meningitidis MC58

47.486

100

0.515