Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   QLQ05_RS07085 Genome accession   NZ_CP125762
Coordinates   1387821..1388516 (+) Length   231 a.a.
NCBI ID   WP_003246034.1    Uniprot ID   Q02170
Organism   Bacillus subtilis strain KRS015     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1382821..1393516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLQ05_RS07065 folC 1383752..1385044 (+) 1293 WP_003229640.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  QLQ05_RS07070 comC 1385184..1385930 (+) 747 WP_010886586.1 A24 family peptidase Machinery gene
  QLQ05_RS07075 spoIIB 1386064..1387062 (+) 999 WP_004398782.1 stage II sporulation protein SpoIIB -
  QLQ05_RS07080 maf 1387215..1387784 (+) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  QLQ05_RS07085 ysxA/radC 1387821..1388516 (+) 696 WP_003246034.1 DNA repair protein RadC Machinery gene
  QLQ05_RS07090 mreB 1388608..1389621 (+) 1014 WP_003229650.1 cell shape-determining protein MreB -
  QLQ05_RS07095 mreC 1389652..1390524 (+) 873 WP_009967915.1 rod shape-determining protein MreC -
  QLQ05_RS07100 mreD 1390521..1391039 (+) 519 WP_004398811.1 rod shape-determining protein MreD -
  QLQ05_RS07105 minC 1391092..1391772 (+) 681 WP_004398901.1 septum site-determining protein MinC -
  QLQ05_RS07110 minD 1391774..1392580 (+) 807 WP_004398624.1 septum site-determining protein MinD -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26146.48 Da        Isoelectric Point: 7.9285

>NTDB_id=763858 QLQ05_RS07085 WP_003246034.1 1387821..1388516(+) (ysxA/radC) [Bacillus subtilis strain KRS015]
MVIHDLPLKLKDFPMKEKPRERLLKVGAENLANHELLAILLRTGTKHESVLDLSNRLLRSFDGLRLLKEASVEELSSIPG
IGMVKAIQILAAVELGSRIHKLANEEHFVIRSPEDGANLVMEDMRFLTQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=763858 QLQ05_RS07085 WP_003246034.1 1387821..1388516(+) (ysxA/radC) [Bacillus subtilis strain KRS015]
TTGGTCATACACGATCTGCCATTAAAACTCAAAGATTTCCCAATGAAAGAAAAGCCAAGGGAACGGCTCCTGAAAGTCGG
AGCCGAGAACTTAGCGAATCATGAACTTTTGGCTATATTATTGCGGACAGGGACTAAACACGAATCTGTTTTGGACCTGT
CAAACCGGCTGCTGCGCTCATTTGACGGGCTGCGCCTGCTCAAGGAAGCATCGGTTGAAGAGCTGTCAAGCATCCCGGGA
ATCGGTATGGTAAAAGCGATTCAAATACTGGCAGCAGTTGAGCTTGGAAGCCGGATTCATAAATTAGCCAACGAAGAACA
TTTCGTTATTCGCTCCCCGGAAGACGGCGCTAATCTTGTCATGGAGGATATGCGCTTTTTAACCCAGGAGCATTTTGTCT
GTTTATACTTAAATACAAAAAATCAAGTCATCCATAAACGCACCGTATTTATCGGAAGCCTGAATTCATCTATTGTCCAC
CCGCGAGAGGTGTTTAAAGAAGCGTTTAAACGATCTGCCGCTTCCTTTATCTGTGTTCATAATCATCCTTCTGGAGATCC
GACGCCGAGCAGGGAAGATATTGAAGTGACAAGACGGCTGTTTGAATGCGGAAACCTGATTGGCATCGAGCTGCTTGACC
ATTTGGTGATCGGGGATAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(110-229)

UPF0758 N-terminal (UPF0758_N)

(11-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q02170

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

100

100

1
  radC Streptococcus pneumoniae TIGR4

48.095

90.909

0.437
  radC Streptococcus pneumoniae R6

47.619

90.909

0.433
  radC Streptococcus pneumoniae D39

47.619

90.909

0.433
  radC Streptococcus gordonii str. Challis substr. CH1

46.667

90.909

0.424