Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OZ403_RS05450 Genome accession   NZ_CP113950
Coordinates   1275014..1275514 (+) Length   166 a.a.
NCBI ID   WP_268783640.1    Uniprot ID   -
Organism   Myxococcus sp. NMCA1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1270014..1280514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OZ403_RS05430 (OZ403_05430) - 1270573..1271034 (+) 462 WP_090485059.1 PTS sugar transporter subunit IIA -
  OZ403_RS05435 (OZ403_05435) - 1271068..1271913 (+) 846 WP_140853168.1 hypothetical protein -
  OZ403_RS05440 (OZ403_05440) dtd 1271910..1272371 (-) 462 WP_140787937.1 D-aminoacyl-tRNA deacylase -
  OZ403_RS05445 (OZ403_05445) dacB 1272557..1274803 (+) 2247 WP_140787939.1 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase -
  OZ403_RS05450 (OZ403_05450) ssb 1275014..1275514 (+) 501 WP_268783640.1 single-stranded DNA-binding protein Machinery gene
  OZ403_RS05455 (OZ403_05455) - 1275637..1276317 (-) 681 WP_140787942.1 succinate dehydrogenase -
  OZ403_RS05460 (OZ403_05460) - 1276580..1277464 (+) 885 WP_268783641.1 Hsp33 family molecular chaperone HslO -
  OZ403_RS05465 (OZ403_05465) - 1277499..1278530 (+) 1032 WP_140787945.1 Glu/Leu/Phe/Val dehydrogenase dimerization domain-containing protein -
  OZ403_RS05470 (OZ403_05470) - 1278661..1279353 (+) 693 WP_140797387.1 phosphoribosyltransferase -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 17655.38 Da        Isoelectric Point: 5.7963

>NTDB_id=763774 OZ403_RS05450 WP_268783640.1 1275014..1275514(+) (ssb) [Myxococcus sp. NMCA1]
MAGGVNKVILIGNLGADPEVRFTPGGQAVANFRIATSESWVDKNGQKQERTEWHRIVVWGKLAELCGEYLKKGRQCYVEG
RLQTREWTDKENRKNYTTEVVANAVTFLGGGGRDAGDGMGGGGGGGGGRRQFSQPRGGDNNDYGQPPPDDMGGGHGGGNG
DDDIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=763774 OZ403_RS05450 WP_268783640.1 1275014..1275514(+) (ssb) [Myxococcus sp. NMCA1]
ATGGCTGGAGGCGTGAACAAGGTCATCCTCATCGGCAACCTCGGGGCGGACCCGGAGGTCCGGTTCACTCCCGGCGGTCA
GGCGGTGGCGAACTTCCGCATCGCCACCAGCGAGAGCTGGGTCGACAAGAATGGCCAGAAGCAGGAGCGGACCGAGTGGC
ACCGCATCGTCGTCTGGGGAAAGCTCGCGGAGCTCTGCGGCGAGTACCTGAAGAAGGGACGGCAGTGCTACGTCGAGGGC
CGCCTGCAGACGCGCGAGTGGACGGACAAGGAGAACCGGAAGAACTACACCACCGAGGTGGTGGCCAACGCCGTGACGTT
CCTCGGCGGTGGGGGCCGTGACGCCGGAGACGGCATGGGTGGTGGCGGGGGCGGGGGCGGTGGACGCCGGCAGTTCTCCC
AGCCGCGCGGGGGAGACAACAATGACTACGGTCAGCCGCCTCCGGACGACATGGGCGGTGGCCATGGCGGCGGCAACGGC
GACGACGACATCCCCTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

47.802

100

0.524
  ssb Glaesserella parasuis strain SC1401

41.989

100

0.458
  ssb Neisseria gonorrhoeae MS11

41.573

100

0.446
  ssb Neisseria meningitidis MC58

42.197

100

0.44