Detailed information NTG0763769

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: OYW20_RS22485
• Genome accession: NZ_CP113949
• Coordinates: 4981517..4982857 (+)
• Length: 446 a.a.
• NCBI ID: WP_268798091.1
• Uniprot ID: -
• Organism: Pseudomonas huanghezhanensis strain BSw22131
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 4976517..4987857

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OYW20_RS22460	pgeF	4976694..4977422 (-)	729	WP_268801208.1	peptidoglycan editing factor PgeF	-
OYW20_RS22465	rluD	4977431..4978393 (-)	963	WP_268798087.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
OYW20_RS22470	-	4978545..4979561 (+)	1017	WP_268798088.1	outer membrane protein assembly factor BamD	-
OYW20_RS22475	-	4979693..4979932 (+)	240	WP_268798089.1	PP0621 family protein	-
OYW20_RS22480	pilS	4979922..4981514 (+)	1593	WP_268798090.1	PAS domain-containing sensor histidine kinase	Regulator
OYW20_RS22485	pilR	4981517..4982857 (+)	1341	WP_268798091.1	sigma-54 dependent transcriptional regulator	Regulator
OYW20_RS22490	-	4982966..4983130 (-)	165	WP_268798092.1	hypothetical protein	-
OYW20_RS22495	thiO	4983328..4984431 (-)	1104	WP_268798093.1	glycine oxidase ThiO	-
OYW20_RS22500	-	4984459..4984887 (-)	429	WP_268798094.1	type IV pilin protein	-

Sequence

Protein

• Length: 446 a.a.
• Molecular weight: 50259.51 Da
• Isoelectric Point: 6.4323

>NTDB_id=763769 OYW20_RS22485 WP_268798091.1 4981517..4982857(+) (pilR) [Pseudomonas huanghezhanensis strain BSw22131]
MSPRQKILIVDDEPDIRELLEITLGRMKLDTRSARNVKEAHEWLAREPFDLCLTDMRLPDGNGLELVQHIQQRHAQVPVA
MITAHGSVDTAIHALKAGAFDFLTKPVDLGRLRELVSSALRLRLATPSESRLEKRLLGESPPMQALRKQISKLARSQAPI
YVSGESGSGKELVARLIHEQGPRVDQPFVPVNCGAIPSDLMESEFFGHRKGSFTGAHEDKPGLFQAANGGTLFLDEVADL
PLAMQVKLLRAIQEKSIRAVGGQQELVVDVRILCATHKDLSEEVAAGRFRQDLYYRLNVIELRVPSLRERREDIEDLANA
VLKRLSIDSAQPPARLQPKALDALKNYRFPGNVRELENMLERAYTLCEDDQINAEDLRLAEPGNAREQSDPNLADIDNLE
DYLESIERKLILQALEETRWNRTAAAQRLNLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1341 bp

>NTDB_id=763769 OYW20_RS22485 WP_268798091.1 4981517..4982857(+) (pilR) [Pseudomonas huanghezhanensis strain BSw22131]
ATGAGCCCACGGCAAAAAATCCTGATCGTCGACGACGAGCCCGACATCCGCGAACTGCTGGAAATCACTCTAGGGCGCAT
GAAGCTCGACACGCGCAGTGCGCGCAATGTCAAAGAGGCGCATGAATGGCTGGCCCGTGAGCCGTTCGATTTGTGCCTCA
CTGACATGCGCCTACCAGATGGCAACGGCCTTGAACTGGTGCAGCACATCCAGCAGCGGCACGCGCAAGTGCCGGTGGCG
ATGATTACCGCACACGGCAGCGTGGACACAGCGATCCACGCGCTCAAGGCGGGTGCTTTCGACTTTCTGACCAAACCGGT
AGACCTCGGTCGCCTGCGTGAGCTGGTCAGCAGCGCGCTGCGACTGCGCCTTGCAACGCCAAGTGAGAGTCGACTTGAAA
AGCGGCTTCTGGGCGAGTCTCCGCCCATGCAGGCGTTGCGCAAGCAGATCAGCAAACTCGCCAGAAGTCAGGCGCCGATC
TATGTCAGCGGCGAGTCGGGCAGTGGCAAAGAACTCGTCGCCAGGCTGATTCACGAACAAGGACCGCGCGTGGATCAGCC
GTTTGTGCCGGTCAACTGTGGCGCAATTCCGTCGGACCTGATGGAAAGCGAGTTTTTCGGCCACCGAAAAGGCAGCTTCA
CAGGCGCCCATGAAGACAAACCAGGCCTGTTTCAGGCCGCGAACGGAGGAACGCTGTTTCTCGATGAGGTGGCGGATTTA
CCGCTGGCCATGCAGGTGAAACTGCTACGCGCCATCCAGGAGAAATCCATCCGCGCAGTAGGCGGCCAGCAAGAGCTGGT
GGTGGATGTGCGCATACTCTGCGCTACGCATAAGGATCTGAGCGAAGAGGTCGCGGCCGGACGCTTCCGGCAAGATCTGT
ATTACCGTCTGAATGTCATCGAACTGCGCGTGCCCTCGTTGCGCGAGCGTCGGGAAGACATTGAGGACCTGGCCAACGCT
GTGCTGAAACGGCTTTCTATTGATAGCGCTCAACCCCCTGCCCGCCTGCAACCCAAAGCATTGGATGCGCTGAAAAACTA
TCGCTTCCCCGGTAATGTGCGCGAGCTGGAAAACATGCTTGAACGGGCGTACACGCTGTGCGAAGACGATCAGATCAATG
CCGAAGACTTACGCCTCGCCGAGCCCGGCAATGCCCGCGAGCAAAGCGATCCAAACCTGGCAGACATCGACAATCTGGAA
GACTACCTGGAGAGCATCGAGCGCAAGCTTATCCTGCAAGCCCTCGAAGAAACGCGCTGGAACAGAACGGCGGCGGCACA
GCGCCTGAACCTGTCGTTTCGGTCCATGCGGTATCGGTTGAAGAAACTGGGGCTGGACTGA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (136-302)

• Bacterial regulatory protein, Fis family (HTH_8) (403-443)

• Response regulator receiver domain (Response_reg) (7-116)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	81.264	99.327	0.807
pilR	Acinetobacter baumannii strain A118	49.237	100	0.507
luxO	Vibrio cholerae strain A1552	37.923	99.327	0.377