Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   OYW20_RS22480 Genome accession   NZ_CP113949
Coordinates   4979922..4981514 (+) Length   530 a.a.
NCBI ID   WP_268798090.1    Uniprot ID   -
Organism   Pseudomonas huanghezhanensis strain BSw22131     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4974922..4986514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OYW20_RS22460 pgeF 4976694..4977422 (-) 729 WP_268801208.1 peptidoglycan editing factor PgeF -
  OYW20_RS22465 rluD 4977431..4978393 (-) 963 WP_268798087.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  OYW20_RS22470 - 4978545..4979561 (+) 1017 WP_268798088.1 outer membrane protein assembly factor BamD -
  OYW20_RS22475 - 4979693..4979932 (+) 240 WP_268798089.1 PP0621 family protein -
  OYW20_RS22480 pilS 4979922..4981514 (+) 1593 WP_268798090.1 PAS domain-containing sensor histidine kinase Regulator
  OYW20_RS22485 pilR 4981517..4982857 (+) 1341 WP_268798091.1 sigma-54 dependent transcriptional regulator Regulator
  OYW20_RS22490 - 4982966..4983130 (-) 165 WP_268798092.1 hypothetical protein -
  OYW20_RS22495 thiO 4983328..4984431 (-) 1104 WP_268798093.1 glycine oxidase ThiO -
  OYW20_RS22500 - 4984459..4984887 (-) 429 WP_268798094.1 type IV pilin protein -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 58390.43 Da        Isoelectric Point: 6.8193

>NTDB_id=763768 OYW20_RS22480 WP_268798090.1 4979922..4981514(+) (pilS) [Pseudomonas huanghezhanensis strain BSw22131]
MSAETLSLATPQAQRILRLYHLYRLTIGVMLVLLISSSLDAELLELADIELFRTGCWVYLVLNILVVVLLERPSTQGPLV
FMALSDALMLSALFYAGGGAPSGIGNLIIASVAISNVLLRKRTGLLIAAISAIGIIYLTFYISYNKPSAASHYVQAGSLG
ALCFAAALLVQALVRRQQVSEGIAEQRAAHVNNLEELNVLILQRMRTGILVLDARRQVLLANQSALTLLGHEELLGKTID
DYSPALLDRLRQWQINPMLAPRSIPTSAIGPVLRAGFIALTRHSHHHTLIFLEDLSQISQQAQQLKLAALGRLTAGIAHE
VRNPLGAISHAAQLLGESEELDAADRRLSQIIQDQSRRMNLVIENVLQLSRRRQTEPQLLDLKQWLQQFVAEHHSAVTDG
RQVHLEAGPGTLTTRMDAEQLQQVMSNLVQNGLRYSAQNNEIGQVWLKLYHNPMSELPTLEVLDDGPGVAQEHLTNIFEP
FFTTESKGTGLGLYLSRELCESNQANLDYSPREGGGSCMRITFAHPFKLS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=763768 OYW20_RS22480 WP_268798090.1 4979922..4981514(+) (pilS) [Pseudomonas huanghezhanensis strain BSw22131]
GTGAGCGCTGAAACGCTTTCTCTGGCTACCCCGCAGGCTCAGCGGATTCTTCGGCTGTATCACCTTTATCGGCTGACCAT
TGGCGTGATGCTGGTACTGCTCATCTCCAGCAGCCTGGACGCAGAGCTGCTCGAGCTGGCCGATATCGAACTGTTTCGAA
CCGGCTGCTGGGTGTATCTGGTCCTCAACATTCTGGTCGTGGTACTGCTGGAACGCCCCAGCACCCAAGGCCCATTGGTG
TTTATGGCATTGAGCGACGCGCTCATGCTGTCAGCACTGTTTTACGCAGGCGGTGGCGCCCCGAGCGGTATTGGCAATCT
GATCATTGCCTCGGTGGCGATCAGCAATGTGCTGCTGCGCAAGCGTACCGGTTTGTTGATCGCAGCCATTTCGGCGATCG
GCATCATCTACCTGACGTTTTATATCAGCTACAACAAACCCTCCGCCGCCAGTCACTATGTGCAGGCAGGCTCGCTGGGC
GCCTTGTGTTTCGCTGCGGCATTGCTCGTCCAGGCCCTGGTTCGACGCCAACAGGTCAGCGAGGGTATCGCCGAGCAACG
CGCAGCGCACGTCAACAATCTCGAAGAACTCAACGTACTGATCCTGCAACGCATGCGCACCGGCATCCTCGTGCTCGACG
CCCGCCGCCAGGTGTTGCTGGCCAATCAGAGCGCATTGACGCTGCTCGGCCATGAAGAACTGCTCGGCAAGACCATTGAT
GATTATTCGCCAGCACTGTTGGATCGCTTGCGCCAATGGCAGATCAATCCAATGCTTGCGCCGCGCAGCATTCCCACATC
GGCGATAGGCCCGGTACTGCGCGCAGGATTTATTGCCCTGACCCGGCACAGCCATCATCACACGCTGATTTTTCTTGAAG
ACCTGTCGCAAATCTCGCAACAGGCGCAGCAGTTGAAACTGGCTGCGCTGGGCCGGCTGACCGCAGGCATTGCCCATGAA
GTCCGTAATCCGCTGGGCGCCATCAGTCATGCCGCGCAGTTGCTGGGCGAGTCGGAGGAACTGGACGCGGCAGACCGGCG
TCTCAGTCAGATCATCCAGGATCAGTCGCGACGGATGAATCTGGTGATCGAAAACGTGTTGCAGCTTTCTCGCAGGCGCC
AAACCGAGCCCCAATTGCTCGACCTCAAGCAATGGCTCCAGCAATTTGTCGCGGAACATCACAGCGCCGTTACCGACGGT
CGGCAAGTGCATCTTGAGGCAGGACCGGGCACCCTCACTACGCGCATGGATGCTGAGCAACTGCAGCAGGTGATGAGCAA
TCTGGTGCAAAACGGCCTGCGCTACAGTGCGCAAAACAATGAGATTGGTCAGGTATGGCTCAAGCTTTATCACAACCCCA
TGAGCGAACTGCCTACTCTGGAAGTGCTGGATGACGGCCCTGGTGTTGCGCAGGAACACCTGACCAATATCTTCGAACCG
TTTTTTACCACCGAAAGCAAAGGCACCGGCCTGGGTCTGTACCTCTCGCGCGAGCTGTGCGAGAGCAATCAGGCCAATCT
GGATTACTCACCACGGGAAGGTGGCGGCAGTTGCATGCGAATTACCTTCGCCCATCCGTTCAAATTGAGTTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)

PAS domain (PAS_8)

(204-253)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

64.407

100

0.645