Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OZX61_RS01065 Genome accession   NZ_CP113932
Coordinates   231422..232006 (+) Length   194 a.a.
NCBI ID   WP_277095029.1    Uniprot ID   -
Organism   Acinetobacter sp. ESL0695     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 226422..237006
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OZX61_RS01040 (OZX61_01040) - 227009..227386 (-) 378 WP_277095027.1 hypothetical protein -
  OZX61_RS01045 (OZX61_01045) - 227608..227892 (+) 285 WP_195772811.1 YciI family protein -
  OZX61_RS01050 (OZX61_01050) tenA 227932..228600 (-) 669 WP_195772810.1 thiaminase II -
  OZX61_RS01055 (OZX61_01055) - 228776..229840 (+) 1065 WP_277095028.1 DUF475 domain-containing protein -
  OZX61_RS01060 (OZX61_01060) - 230000..231373 (+) 1374 WP_195772826.1 MFS transporter -
  OZX61_RS01065 (OZX61_01065) ssb 231422..232006 (+) 585 WP_277095029.1 single-stranded DNA-binding protein Machinery gene
  OZX61_RS01070 (OZX61_01070) - 232438..233502 (+) 1065 WP_277095030.1 DUF475 domain-containing protein -
  OZX61_RS01075 (OZX61_01075) - 233549..234118 (+) 570 WP_277095031.1 hypothetical protein -
  OZX61_RS01080 (OZX61_01080) - 234415..234651 (+) 237 WP_211140184.1 hypothetical protein -
  OZX61_RS01085 (OZX61_01085) - 234720..235340 (+) 621 WP_277095032.1 tetratricopeptide repeat protein -
  OZX61_RS01090 (OZX61_01090) - 235629..236306 (+) 678 WP_277095034.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 21576.41 Da        Isoelectric Point: 5.9287

>NTDB_id=763605 OZX61_RS01065 WP_277095029.1 231422..232006(+) (ssb) [Acinetobacter sp. ESL0695]
MRGVNKVILVGTLGRDPETKTFPNGGSITQFSIATSENWVDKNTGERKENTEWHRIVLNNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDSRQMGDQAPNFGGGDQSGYGQPRFNQQPQSNGYGNQNTPPQNTGYNSNNFA
GQNAGGGYGQNNAMQKPQQPSSPAPNDLDDDLPF

Nucleotide


Download         Length: 585 bp        

>NTDB_id=763605 OZX61_RS01065 WP_277095029.1 231422..232006(+) (ssb) [Acinetobacter sp. ESL0695]
ATGCGCGGTGTAAATAAAGTTATTCTAGTCGGAACTTTGGGGCGAGATCCTGAGACAAAAACTTTTCCAAATGGTGGTTC
GATCACTCAATTTTCTATTGCAACAAGTGAAAACTGGGTAGATAAAAATACAGGTGAAAGAAAAGAAAATACTGAATGGC
ACCGTATTGTATTGAATAACCGTCTTGGTGAAATTGCTCAGCAGTATTTACGTAAAGGTTCGAAAGTATATATCGAAGGC
TCTTTACGTACTCGTCAGTGGACAGATCAAAATGGTCAAGAGCGTTATACTACTGAGATCCGAGGCGATCAAATGCAAAT
GCTCGATTCACGTCAAATGGGTGATCAAGCACCAAACTTTGGTGGTGGTGACCAAAGTGGATATGGACAACCAAGATTTA
ATCAGCAGCCACAAAGTAATGGTTATGGTAATCAAAATACTCCACCGCAAAATACGGGTTACAACTCGAATAATTTTGCA
GGTCAGAATGCTGGCGGTGGGTATGGTCAAAATAATGCGATGCAGAAACCTCAGCAACCGAGTTCGCCTGCACCAAATGA
CTTAGATGATGATTTACCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

53.608

100

0.536
  ssb Vibrio cholerae strain A1552

44.878

100

0.474
  ssb Neisseria meningitidis MC58

37.696

98.454

0.371
  ssb Neisseria gonorrhoeae MS11

37.696

98.454

0.371