Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   QMK16_RS06960 Genome accession   NZ_CP125396
Coordinates   1333685..1334692 (+) Length   335 a.a.
NCBI ID   WP_002856258.1    Uniprot ID   Q9PMT7
Organism   Campylobacter jejuni strain SKBC57     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1328685..1339692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK16_RS06940 (QMK16_06940) nrfH 1329952..1330467 (-) 516 WP_010891930.1 cytochrome c nitrite reductase small subunit -
  QMK16_RS06945 (QMK16_06945) ppk 1330632..1332740 (+) 2109 WP_270186784.1 RNA degradosome polyphosphate kinase -
  QMK16_RS06955 (QMK16_06955) - 1333184..1333594 (-) 411 WP_002783915.1 hypothetical protein -
  QMK16_RS06960 (QMK16_06960) ruvB 1333685..1334692 (+) 1008 WP_002856258.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  QMK16_RS06965 (QMK16_06965) amaA 1334696..1335739 (+) 1044 WP_002856044.1 AI-2E family transporter -
  QMK16_RS06970 (QMK16_06970) fumC 1335769..1337160 (-) 1392 WP_002857888.1 class II fumarate hydratase -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 37311.85 Da        Isoelectric Point: 4.9081

>NTDB_id=763280 QMK16_RS06960 WP_002856258.1 1333685..1334692(+) (ruvB) [Campylobacter jejuni strain SKBC57]
MDRIVEIEKYSFDETYETSLRPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANI
KTTAAPMIEKSGDLAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTR
AGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIIT
EKRANEALNSLGVNELGFDAMDLRYLELLTAAKQKPIGLASIAAALSEDENTIEDVIEPYLLANGYIERTAKGRIASAKS
YSALKLNYEKTLFEE

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=763280 QMK16_RS06960 WP_002856258.1 1333685..1334692(+) (ruvB) [Campylobacter jejuni strain SKBC57]
ATGGATAGAATAGTAGAAATAGAAAAATACTCCTTTGATGAAACTTACGAAACTTCGTTGCGTCCTTCAAATTTTGATGG
TTATATAGGTCAAGAAAGCATTAAAAAAAATTTAAATGTCTTTATAGCTGCAGCCAAAAAACGCAATGAATGTTTAGATC
ATATACTTTTTAGTGGTCCTGCAGGACTTGGAAAAACAACACTAGCTAATATCATCTCCTATGAAATGAGTGCAAATATC
AAAACAACCGCCGCTCCTATGATAGAAAAAAGCGGAGATTTAGCCGCTATTTTAACCAATCTTAGCGAAGGGGATATACT
TTTTATCGATGAAATTCATCGCTTAAGTCCTGCTATCGAAGAAGTGCTTTACCCTGCAATGGAGGATTACCGCCTTGATA
TTATCATAGGTAGTGGTCCAGCTGCTCAAACCATAAAAATCGATTTACCAAAATTTACTCTTATAGGGGCTACAACGCGT
GCAGGTATGCTTAGCAATCCTTTGCGTGATCGTTTTGGTATGCAATTTAGATTAGAATTTTACAAAGATAGCGAACTTGC
CCTCATCTTGCAAAAAGCAGCTTTAAAACTTAATAAAACTTGCGAAGAAAAAGCCGCACTTGAGATCGCTAAAAGAAGTC
GTTCAACCCCTAGAATAGCTCTAAGGCTTTTAAAAAGAGTTAGAGATTTTGCCGATGTTAATGATGAAGAGATTATCACA
GAAAAAAGGGCTAATGAGGCCTTAAATTCTTTAGGGGTTAATGAGCTTGGTTTTGATGCGATGGATTTAAGATATCTTGA
ACTTTTAACCGCTGCTAAGCAAAAACCTATCGGGCTTGCAAGTATTGCTGCGGCTTTAAGTGAAGATGAAAATACCATAG
AAGATGTAATCGAGCCTTATTTATTAGCTAATGGCTATATAGAACGCACTGCAAAAGGGCGTATAGCAAGTGCAAAAAGT
TATAGTGCTTTAAAACTAAACTATGAAAAAACTTTATTTGAGGAGTAA

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(255-325)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(20-178)

RuvB AAA lid domain (AAA_lid_4)

(181-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 3PFI

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Helicobacter pylori 26695

69.162

99.701

0.69
  ruvB Bacillus subtilis subsp. subtilis str. 168

52.761

97.313

0.513
  ruvB Synechocystis sp. PCC 6803

49.221

95.821

0.472
  ruvB Streptococcus pneumoniae TIGR4

48.024

98.209

0.472
  ruvB Streptococcus pneumoniae R6

48.024

98.209

0.472
  ruvB Streptococcus pneumoniae D39

48.024

98.209

0.472