Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OX890_RS05105 Genome accession   NZ_CP113808
Coordinates   1158104..1158808 (+) Length   234 a.a.
NCBI ID   WP_006083192.1    Uniprot ID   A0A9X2WXK9
Organism   Shewanella sp. DAU305     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1153104..1163808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OX890_RS05095 (OX890_05095) uvrA 1153329..1156211 (-) 2883 WP_012586712.1 excinuclease ABC subunit UvrA -
  OX890_RS05100 (OX890_05100) - 1156627..1157994 (+) 1368 WP_126491123.1 MFS transporter -
  OX890_RS05105 (OX890_05105) ssb 1158104..1158808 (+) 705 WP_006083192.1 single-stranded DNA-binding protein Machinery gene
  OX890_RS05110 (OX890_05110) - 1158985..1160052 (-) 1068 WP_012196631.1 porin -
  OX890_RS05115 (OX890_05115) - 1160283..1161008 (-) 726 WP_006083150.1 fumarate reductase iron-sulfur subunit -
  OX890_RS05120 (OX890_05120) - 1161005..1163014 (-) 2010 WP_006083149.1 fumarate reductase flavoprotein subunit -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 25189.73 Da        Isoelectric Point: 5.2341

>NTDB_id=763162 OX890_RS05105 WP_006083192.1 1158104..1158808(+) (ssb) [Shewanella sp. DAU305]
MASRGVNKVILVGNLGQDPEVRYMPNGNAVANITVATSESWKDQQGQQQERTEWHRVVLFGKLAEITGEYLRKGSQVYLE
GKLQTRKWKDQSGQDRYSTEVVIDQSGSMQMLGSRGQGGQAQGAPMGGGMPQNAGYQSAPQQAAPAQNQYAPAPQAAPAY
QAPAQQQYAAPAPAQQQYGQQQAQPQQGGYAPKPQAAPAPAYQAPAAPAQRPAPQPQQNFTPDLDDGWDDDIPF

Nucleotide


Download         Length: 705 bp        

>NTDB_id=763162 OX890_RS05105 WP_006083192.1 1158104..1158808(+) (ssb) [Shewanella sp. DAU305]
ATGGCCAGTCGTGGTGTTAACAAGGTAATTTTGGTTGGCAATTTGGGACAAGATCCAGAAGTGCGTTATATGCCAAACGG
TAATGCAGTCGCTAACATTACAGTTGCGACCAGCGAATCGTGGAAAGACCAACAAGGTCAACAGCAAGAGCGTACTGAAT
GGCACCGTGTGGTTCTGTTCGGCAAATTAGCTGAAATTACAGGTGAATACCTGCGTAAAGGTTCACAGGTTTACCTCGAA
GGTAAACTGCAAACCCGTAAGTGGAAAGACCAAAGCGGTCAAGACCGTTACAGCACTGAAGTGGTTATCGATCAAAGCGG
TAGCATGCAAATGCTAGGTAGCCGTGGTCAAGGTGGCCAAGCACAAGGCGCGCCAATGGGCGGCGGCATGCCACAAAACG
CAGGTTACCAATCTGCACCACAACAAGCGGCACCAGCGCAAAATCAATATGCGCCAGCCCCTCAAGCTGCACCTGCTTAC
CAAGCGCCAGCTCAGCAACAATATGCTGCGCCAGCACCTGCTCAGCAGCAATATGGACAGCAACAAGCTCAACCACAACA
AGGTGGTTATGCGCCTAAGCCACAAGCCGCTCCAGCGCCTGCTTATCAAGCGCCAGCCGCACCGGCACAACGTCCTGCAC
CACAACCACAGCAAAACTTCACTCCAGATTTGGATGATGGCTGGGATGACGATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

64.571

74.786

0.483
  ssb Glaesserella parasuis strain SC1401

45.022

98.718

0.444
  ssb Neisseria meningitidis MC58

41.558

98.718

0.41
  ssb Neisseria gonorrhoeae MS11

40.693

98.718

0.402