Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   QMK13_RS03035 Genome accession   NZ_CP125390
Coordinates   593305..593688 (+) Length   127 a.a.
NCBI ID   WP_002856861.1    Uniprot ID   -
Organism   Campylobacter jejuni strain SKBC9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 588305..598688
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK13_RS03015 (QMK13_03015) - 588384..590318 (-) 1935 WP_087686097.1 ribonuclease R family protein -
  QMK13_RS03020 (QMK13_03020) ilvC 590437..591459 (+) 1023 WP_002921147.1 ketol-acid reductoisomerase -
  QMK13_RS03025 (QMK13_03025) - 591463..592545 (+) 1083 WP_002938302.1 divergent polysaccharide deacetylase family protein -
  QMK13_RS03030 (QMK13_03030) dprA 592535..593308 (+) 774 WP_002938303.1 DNA-processing protein DprA Machinery gene
  QMK13_RS03035 (QMK13_03035) dprB 593305..593688 (+) 384 WP_002856861.1 Holliday junction resolvase RuvX Machinery gene
  QMK13_RS03040 (QMK13_03040) - 593717..594556 (+) 840 WP_074469326.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  QMK13_RS03045 (QMK13_03045) msrA 594732..595229 (-) 498 WP_002855174.1 peptide-methionine (S)-S-oxide reductase MsrA -
  QMK13_RS03050 (QMK13_03050) ppa 595270..595788 (-) 519 WP_002855031.1 inorganic diphosphatase -
  QMK13_RS03055 (QMK13_03055) adk 595798..596376 (-) 579 WP_002855137.1 adenylate kinase -
  QMK13_RS03060 (QMK13_03060) aspS 596373..598124 (-) 1752 WP_002938312.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14074.57 Da        Isoelectric Point: 9.5433

>NTDB_id=763162 QMK13_RS03035 WP_002856861.1 593305..593688(+) (dprB) [Campylobacter jejuni strain SKBC9]
MRALALDVGLKRIGVALCVDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALGYGVANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=763162 QMK13_RS03035 WP_002856861.1 593305..593688(+) (dprB) [Campylobacter jejuni strain SKBC9]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCGTAGATAAAAAGATTGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCTGCCAATGAAATCAAAAATTTACTTAAAATACATGAAATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGCGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTATCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGTGGAACAAGTAAAGAAGCTTTAGGATACGGCGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCTTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449