Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OXH62_RS13950 Genome accession   NZ_CP113803
Coordinates   3027631..3028149 (-) Length   172 a.a.
NCBI ID   WP_003228709.1    Uniprot ID   J2XFA9
Organism   Pseudomonas chlororaphis strain YJY915     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3022631..3033149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OXH62_RS13920 (OXH62_13860) - 3023086..3023754 (+) 669 WP_375747980.1 YjfI family protein -
  OXH62_RS13925 (OXH62_13865) - 3023772..3024470 (+) 699 WP_007955625.1 PspA/IM30 family protein -
  OXH62_RS13930 (OXH62_13870) - 3024594..3025244 (+) 651 WP_127800186.1 DUF2491 family protein -
  OXH62_RS13935 (OXH62_13875) - 3025258..3025683 (+) 426 WP_007955627.1 DUF350 domain-containing protein -
  OXH62_RS13940 (OXH62_13880) - 3025701..3026393 (+) 693 WP_085609134.1 DUF1190 domain-containing protein -
  OXH62_RS13945 (OXH62_13885) - 3026396..3027553 (+) 1158 WP_085747595.1 glutathionylspermidine synthase family protein -
  OXH62_RS13950 (OXH62_13890) ssb 3027631..3028149 (-) 519 WP_003228709.1 single-stranded DNA-binding protein Machinery gene
  OXH62_RS13955 (OXH62_13895) - 3028159..3029556 (-) 1398 WP_007955631.1 MFS transporter -
  OXH62_RS13960 (OXH62_13900) uvrA 3029748..3032582 (+) 2835 WP_007955632.1 excinuclease ABC subunit UvrA -
  OXH62_RS13965 (OXH62_13905) bfr 3032648..3033115 (-) 468 WP_007955633.1 bacterioferritin -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19115.25 Da        Isoelectric Point: 5.9314

>NTDB_id=763144 OXH62_RS13950 WP_003228709.1 3027631..3028149(-) (ssb) [Pseudomonas chlororaphis strain YJY915]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQQGDQQGGGNNYQQQAPRQQAPRPQQSAPQQRSAPAPQQAAPQPA
PDFDSFDDDIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=763144 OXH62_RS13950 WP_003228709.1 3027631..3028149(-) (ssb) [Pseudomonas chlororaphis strain YJY915]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGTACTTGCGGCCAGGATCCCGAAGTACGCTACCTGCCCAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAGCAGTGGACCGACAAGCAGACCGGTCAGAAGGTCGAGAAGACCGAGT
GGCACCGCGTATCGATGTTCGGCAAGGTTGCCGAAATCGCCGGCGAATACCTGCGCAAGGGTTCGCAGGTTTACATCGAA
GGCAAGCTGCAGACCCGTGAATGGGAAAAAGACGGTATCAAGCGTTACACCACCGAGATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTCGGCGGCCGTCCACAACAGGGCGACCAACAAGGCGGTGGCAACAACTATCAGCAGCAGGCGCCACGCC
AACAGGCTCCGCGTCCGCAGCAGTCGGCACCTCAGCAGCGTTCGGCTCCGGCTCCGCAGCAGGCCGCACCGCAACCGGCT
CCGGATTTCGACAGCTTCGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J2XFA9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.242

100

0.616
  ssb Glaesserella parasuis strain SC1401

48.066

100

0.506
  ssb Neisseria meningitidis MC58

47.222

100

0.494
  ssb Neisseria gonorrhoeae MS11

47.222

100

0.494