Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   QMK08_RS06630 Genome accession   NZ_CP125386
Coordinates   1302449..1303456 (+) Length   335 a.a.
NCBI ID   WP_002866780.1    Uniprot ID   A8FN42
Organism   Campylobacter jejuni strain SKBC41     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1297449..1308456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK08_RS06615 (QMK08_06615) capC 1299127..1301382 (-) 2256 WP_002866779.1 autotransporter adhesin CapC -
  QMK08_RS06625 (QMK08_06625) - 1301948..1302358 (-) 411 WP_002783915.1 hypothetical protein -
  QMK08_RS06630 (QMK08_06630) ruvB 1302449..1303456 (+) 1008 WP_002866780.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  QMK08_RS06635 (QMK08_06635) amaA 1303460..1304503 (+) 1044 WP_002862038.1 AI-2E family transporter -
  QMK08_RS06640 (QMK08_06640) fumC 1304533..1305924 (-) 1392 WP_002877339.1 class II fumarate hydratase -
  QMK08_RS06645 (QMK08_06645) glmS 1306059..1307855 (-) 1797 WP_012006756.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 37281.82 Da        Isoelectric Point: 4.9081

>NTDB_id=763048 QMK08_RS06630 WP_002866780.1 1302449..1303456(+) (ruvB) [Campylobacter jejuni strain SKBC41]
MDRIVEIEKYSFDETYETSLRPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMGANI
KTTAAPMIEKSGDLAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTR
AGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIIT
EKRANEALNSLGVNELGFDAMDLRYLELLTAAKQKPIGLASIAAALSEDENTIEDVIEPYLLANGYIERTAKGRIASAKS
YSALKLNYEKTLFEE

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=763048 QMK08_RS06630 WP_002866780.1 1302449..1303456(+) (ruvB) [Campylobacter jejuni strain SKBC41]
ATGGATAGAATAGTAGAAATAGAAAAATACTCCTTTGATGAAACTTACGAAACTTCGTTGCGTCCTTCAAATTTTGATGG
TTATATAGGTCAAGAAAGCATTAAAAAAAATTTAAATGTCTTTATAGCTGCAGCTAAAAAACGCAATGAATGTTTAGATC
ATATACTTTTTAGCGGTCCTGCAGGACTTGGAAAAACAACACTAGCTAATATCATCTCCTATGAAATGGGTGCAAATATC
AAAACAACCGCCGCTCCTATGATAGAAAAAAGCGGAGATTTAGCAGCCATTTTAACCAATCTTAGCGAAGGAGATATACT
TTTTATCGATGAAATTCACCGCTTAAGCCCTGCTATCGAAGAAGTGCTTTACCCTGCAATGGAGGATTACCGCCTTGATA
TCATTATAGGTAGTGGCCCAGCTGCTCAAACTATAAAAATCGATTTACCAAAATTTACTCTTATAGGGGCTACAACGCGT
GCAGGTATGCTTAGCAATCCTTTACGTGATCGTTTTGGTATGCAATTTAGATTAGAATTTTACAAAGATAGCGAACTTGC
CCTAATCTTGCAAAAAGCAGCTTTAAAACTTAATAAAACTTGTGAAGAAAAAGCCGCACTTGAGATCGCTAAAAGAAGTC
GTTCAACTCCTAGAATAGCTCTAAGGCTTTTAAAAAGAGTTAGAGATTTTGCTGATGTTAATGATGAAGAGATTATCACA
GAAAAAAGAGCTAATGAGGCCTTAAATTCTTTAGGAGTTAATGAGCTTGGTTTTGATGCGATGGATTTAAGATATCTTGA
ACTTTTAACCGCTGCTAAGCAAAAACCTATCGGACTTGCAAGTATTGCTGCGGCTTTAAGCGAAGATGAAAATACCATAG
AAGATGTAATCGAGCCTTATTTATTAGCTAATGGCTATATAGAACGCACTGCAAAAGGGCGTATAGCGAGTGCAAAAAGC
TATAGTGCTTTAAAACTAAACTATGAAAAAACTTTATTTGAGGAGTAA

Domains

Predicted by InterProScan.

RuvB AAA lid domain (AAA_lid_4)

(181-254)

RuvB C-terminal winged helix domain (WHD_RuvB)

(255-325)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(20-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A8FN42

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Helicobacter pylori 26695

69.162

99.701

0.69
  ruvB Bacillus subtilis subsp. subtilis str. 168

53.067

97.313

0.516
  ruvB Streptococcus pneumoniae TIGR4

48.328

98.209

0.475
  ruvB Streptococcus pneumoniae R6

48.328

98.209

0.475
  ruvB Streptococcus pneumoniae D39

48.328

98.209

0.475
  ruvB Synechocystis sp. PCC 6803

49.221

95.821

0.472