Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   OY559_RS16285 Genome accession   NZ_CP113783
Coordinates   3446585..3447643 (-) Length   352 a.a.
NCBI ID   WP_142125624.1    Uniprot ID   A0A543DBL1
Organism   Pseudoxanthomonas sp. SE1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3441585..3452643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OY559_RS16265 (OY559_16275) - 3442644..3444569 (-) 1926 WP_277727286.1 type IV pilus secretin PilQ family protein -
  OY559_RS16270 (OY559_16280) - 3444584..3445108 (-) 525 WP_277730034.1 pilus assembly protein PilP -
  OY559_RS16275 (OY559_16285) pilO 3445108..3445797 (-) 690 WP_277727287.1 type 4a pilus biogenesis protein PilO -
  OY559_RS16280 (OY559_16290) - 3445794..3446585 (-) 792 WP_277727288.1 PilN domain-containing protein -
  OY559_RS16285 (OY559_16295) pilM 3446585..3447643 (-) 1059 WP_142125624.1 pilus assembly protein PilM Machinery gene
  OY559_RS16290 (OY559_16300) - 3447860..3450286 (+) 2427 WP_277727290.1 penicillin-binding protein 1A -
  OY559_RS16295 (OY559_16305) - 3450393..3451049 (+) 657 WP_277727291.1 hypothetical protein -
  OY559_RS16300 (OY559_16310) - 3451156..3452190 (+) 1035 WP_277727292.1 aldo/keto reductase -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37872.48 Da        Isoelectric Point: 4.4422

>NTDB_id=763047 OY559_RS16285 WP_142125624.1 3446585..3447643(-) (pilM) [Pseudoxanthomonas sp. SE1]
MGLIPKSQSSLIGVDISSTAVKLLQLSRVGNRYRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAVNRAGSKAKHAAAA
VAGSAVITKIIPMPADLDENDLEAQVELEAVNYIPYPIEEVNIDFEVLGPMPNNPEMVQVLLAASRSENVELRQSALELG
GLTAKVMDVEAFAVENAFALMANDLPVPQDGVVALVDIGATMTTLNVLRRGRSLYSREQVFGGKQLTDEVMRRYGLTYEE
AGLAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDQIVLAGGCAALAGLPEMVEEQLGVPTVVANPLA
QMTLGPRVQAHALAQDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=763047 OY559_RS16285 WP_142125624.1 3446585..3447643(-) (pilM) [Pseudoxanthomonas sp. SE1]
GTGGGGCTAATCCCAAAAAGCCAGTCGTCGCTGATCGGCGTCGATATCAGTTCGACTGCGGTGAAGCTGCTGCAGCTCTC
GCGTGTGGGCAACCGTTACCGGGTTGAGCACTACGCCGTCGAGCCGCTGCCGCCCAATGCCGTGGTCGAGAAGAACATCG
TCGAGGTGGAAGCCGTCGGCGAGGCCATCCGTCGCGCGGTGAACCGTGCCGGCAGCAAGGCCAAGCATGCCGCCGCCGCG
GTCGCCGGATCGGCGGTGATCACCAAGATCATCCCGATGCCTGCCGACCTGGACGAGAACGACCTGGAGGCCCAGGTCGA
GCTCGAGGCCGTCAATTACATCCCGTATCCCATCGAGGAAGTGAACATCGACTTCGAGGTGCTGGGCCCCATGCCCAACA
ACCCGGAGATGGTGCAGGTGCTGCTGGCCGCTTCGCGCTCGGAGAACGTGGAGCTGCGGCAGTCCGCACTCGAACTCGGC
GGCCTGACCGCCAAGGTCATGGACGTGGAAGCCTTCGCGGTGGAGAACGCCTTCGCCCTGATGGCCAACGATCTGCCCGT
CCCGCAGGACGGCGTGGTGGCGCTGGTCGACATCGGCGCCACGATGACCACGCTGAACGTCCTGCGCCGTGGCCGCAGCC
TCTACAGCCGCGAACAGGTGTTCGGCGGCAAGCAGCTGACCGACGAAGTGATGCGGCGGTACGGACTGACGTATGAAGAA
GCCGGTCTGGCCAAGCGCCAGGGCGGTCTGCCGGAAAGCTATGAAGTCGAAGTGCTGGAGCCTTTCAAGGAGGCGACGGT
CCAGCAGATCAGCCGCCTGCTGCAGTTCTTCTACGCGGGCAGTGAATTCAACCGCGTCGACCAGATCGTCCTGGCGGGCG
GCTGCGCCGCGCTGGCCGGCCTGCCGGAAATGGTGGAAGAGCAACTGGGCGTGCCCACCGTGGTCGCCAACCCGCTGGCG
CAGATGACCCTCGGCCCGCGCGTGCAGGCGCATGCGCTGGCACAGGACGCTCCCGCGCTGATGATCGCCACCGGCCTGGC
TTTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A543DBL1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

51.136

100

0.511
  comM Acinetobacter nosocomialis M2

50.852

100

0.509
  comM Acinetobacter baylyi ADP1

50.857

99.432

0.506
  pilM Legionella pneumophila strain ERS1305867

45.042

100

0.452