Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   QMK08_RS05585 Genome accession   NZ_CP125386
Coordinates   1090155..1091105 (+) Length   316 a.a.
NCBI ID   WP_053869672.1    Uniprot ID   -
Organism   Campylobacter jejuni strain SKBC41     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1085155..1096105
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK08_RS05560 (QMK08_05560) - 1085504..1086526 (-) 1023 WP_002876190.1 hypothetical protein -
  QMK08_RS05565 (QMK08_05565) - 1086597..1087370 (+) 774 WP_002866160.1 glycosyltransferase family 25 protein -
  QMK08_RS05570 (QMK08_05570) wlaTB 1087363..1088319 (+) 957 WP_002860237.1 class E lipooligosaccharide biosynthesis protein WlaTB -
  QMK08_RS05575 (QMK08_05575) wlaTC 1088316..1089275 (+) 960 WP_002860238.1 class E lipooligosaccharide biosynthesis protein WlaTC -
  QMK08_RS05580 (QMK08_05580) - 1089278..1090096 (-) 819 WP_070240931.1 glycosyltransferase family 2 protein -
  QMK08_RS05585 (QMK08_05585) waaF 1090155..1091105 (+) 951 WP_053869672.1 lipopolysaccharide heptosyltransferase II Regulator
  QMK08_RS05590 (QMK08_05590) - 1091157..1092656 (+) 1500 WP_002877116.1 MBOAT family O-acyltransferase -
  QMK08_RS05595 (QMK08_05595) - 1092804..1093781 (+) 978 WP_002866168.1 hypothetical protein -
  QMK08_RS05600 (QMK08_05600) gmhA 1093785..1094345 (-) 561 WP_002877119.1 D-sedoheptulose 7-phosphate isomerase -
  QMK08_RS05605 (QMK08_05605) rfaE1 1094342..1095727 (-) 1386 WP_002877121.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 36215.73 Da        Isoelectric Point: 10.2575

>NTDB_id=763036 QMK08_RS05585 WP_053869672.1 1090155..1091105(+) (waaF) [Campylobacter jejuni strain SKBC41]
MKIFIHLPTWLGDAVMASPALYAIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKAHSKDLKLPFKLKLQDPLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKSEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISTVYKIKTVAIFGPTKFTQTSPWQNQNAKLVHLDLACMPCMQKTCPLKHHKCMKDLKPEKVIEEIKKLSTP

Nucleotide


Download         Length: 951 bp        

>NTDB_id=763036 QMK08_RS05585 WP_053869672.1 1090155..1091105(+) (waaF) [Campylobacter jejuni strain SKBC41]
ATGAAAATTTTTATACATCTTCCCACTTGGCTGGGCGATGCAGTGATGGCTTCACCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGCTCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCTCGCTATAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAGATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTGCATATCCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTCTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAACTTCAAGACCCTCTTGTCTTAAAAAATGGTAAAAAAATTCTAGGACTCAATCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAAATTTT
AATCTTTGGCGCAGGAAAATCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAACAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGTCCTATGCACATAAGTACGGTTTATAAGATAAAAACCGTGGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATCAAAACGCAAAATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGTCCTTTAAAGC
ACCATAAATGCATGAAAGATCTAAAGCCTGAAAAGGTGATAGAAGAAATTAAAAAATTAAGCACTCCATAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(94-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

93.61

99.051

0.927