Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OY559_RS04770 Genome accession   NZ_CP113783
Coordinates   1044093..1044590 (+) Length   165 a.a.
NCBI ID   WP_277728948.1    Uniprot ID   -
Organism   Pseudoxanthomonas sp. SE1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1039093..1049590
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OY559_RS04750 (OY559_04750) murL 1039331..1040686 (+) 1356 WP_277728944.1 UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-L- glutamate epimerase -
  OY559_RS04755 (OY559_04755) murD 1040667..1042070 (+) 1404 WP_277728945.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -
  OY559_RS04760 (OY559_04760) - 1042145..1042927 (+) 783 WP_277728946.1 dienelactone hydrolase family protein -
  OY559_RS04765 (OY559_04765) - 1042941..1043939 (-) 999 WP_277728947.1 polyprenyl synthetase family protein -
  OY559_RS04770 (OY559_04770) ssb 1044093..1044590 (+) 498 WP_277728948.1 single-stranded DNA-binding protein Machinery gene
  OY559_RS04775 (OY559_04775) rfbB 1044648..1045703 (+) 1056 WP_277728949.1 dTDP-glucose 4,6-dehydratase -
  OY559_RS04780 (OY559_04780) rfbA 1045718..1046605 (+) 888 WP_277728950.1 glucose-1-phosphate thymidylyltransferase RfbA -
  OY559_RS04785 (OY559_04785) rfbC 1046602..1047159 (+) 558 WP_277728951.1 dTDP-4-dehydrorhamnose 3,5-epimerase -
  OY559_RS04790 (OY559_04790) rfbD 1047156..1048043 (+) 888 WP_277728952.1 dTDP-4-dehydrorhamnose reductase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 17703.50 Da        Isoelectric Point: 5.3095

>NTDB_id=763036 OY559_RS04770 WP_277728948.1 1044093..1044590(+) (ssb) [Pseudoxanthomonas sp. SE1]
MARGINKVILVGNLGNDPETRYTQGGMAITRISLATTSVRKDKDGNQQERTEWHRVVFFGKLGEIAGEYLRKGSSVYVEG
SIRYDKYTGQDGQEKYSTDIIADEMQMLGGREGGGGGAAGGDRPARAPRQDYGNQGGGGGQRRSAPAPASQPAPMDDFAD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=763036 OY559_RS04770 WP_277728948.1 1044093..1044590(+) (ssb) [Pseudoxanthomonas sp. SE1]
ATGGCCCGCGGCATCAACAAAGTCATCCTGGTCGGCAACCTCGGCAACGACCCCGAAACCCGCTACACGCAGGGCGGCAT
GGCGATCACCCGGATCAGCCTGGCCACCACCAGCGTGCGCAAGGACAAGGACGGCAACCAGCAGGAGCGCACCGAATGGC
ACCGCGTGGTGTTCTTCGGCAAGCTCGGCGAGATCGCCGGCGAGTACCTGCGCAAGGGCAGTTCGGTGTATGTCGAGGGT
TCGATCCGCTACGACAAGTACACCGGTCAGGATGGGCAGGAGAAGTACTCCACCGACATCATCGCCGACGAGATGCAGAT
GCTCGGCGGCCGCGAAGGCGGCGGTGGCGGAGCGGCTGGTGGCGACCGCCCGGCCCGTGCGCCGCGCCAGGACTACGGCA
ACCAGGGCGGTGGTGGTGGCCAGCGTCGTTCCGCGCCCGCGCCTGCTTCGCAGCCGGCGCCGATGGATGACTTCGCGGAT
GACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

47.514

100

0.521
  ssb Vibrio cholerae strain A1552

48.023

100

0.515
  ssb Neisseria meningitidis MC58

44.253

100

0.467
  ssb Neisseria gonorrhoeae MS11

44.253

100

0.467