Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QMK41_RS03990 Genome accession   NZ_CP125367
Coordinates   819755..820252 (+) Length   165 a.a.
NCBI ID   WP_003114685.1    Uniprot ID   A0A0H2ZGD4
Organism   Pseudomonas aeruginosa strain ZY1710     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 814755..825252
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK41_RS03975 (QMK41_03975) bfr 814764..815228 (+) 465 WP_003093668.1 bacterioferritin -
  QMK41_RS03980 (QMK41_03980) uvrA 815299..818136 (-) 2838 WP_003093663.1 excinuclease ABC subunit UvrA Machinery gene
  QMK41_RS03985 (QMK41_03985) - 818350..819738 (+) 1389 WP_003103910.1 MFS transporter -
  QMK41_RS03990 (QMK41_03990) ssb 819755..820252 (+) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  QMK41_RS03995 (QMK41_03995) pchA 820341..821771 (-) 1431 WP_003118152.1 isochorismate synthase PchA -
  QMK41_RS04000 (QMK41_04000) pchB 821768..822073 (-) 306 WP_003106950.1 isochorismate lyase PchB -
  QMK41_RS04005 (QMK41_04005) pchC 822073..822828 (-) 756 WP_003118153.1 pyochelin biosynthesis editing thioesterase PchC -
  QMK41_RS04010 (QMK41_04010) pchD 822825..824468 (-) 1644 WP_015649689.1 pyochelin biosynthesis salicyl-AMP ligase PchD -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18557.46 Da        Isoelectric Point: 5.2781

>NTDB_id=762878 QMK41_RS03990 WP_003114685.1 819755..820252(+) (ssb) [Pseudomonas aeruginosa strain ZY1710]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=762878 QMK41_RS03990 WP_003114685.1 819755..820252(+) (ssb) [Pseudomonas aeruginosa strain ZY1710]
ATGGCCCGTGGGGTTAACAAAGTCATTCTAGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGCCAGGATGGTCAGGATCGCTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGTTGCTCGGCGGCCGCCCCTCCGGCGACGATTCGCAGCGCGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAGCAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGCCGCAACCGGCCCAGGACTACGACAGCTTCGAC
GACGACATTCCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZGD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.636
  ssb Glaesserella parasuis strain SC1401

52.486

100

0.576
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.521
  ssb Neisseria meningitidis MC58

47.486

100

0.515