Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | OHP008_RS03925 | Genome accession | NZ_AP024965 |
| Coordinates | 813904..814914 (-) | Length | 336 a.a. |
| NCBI ID | WP_096396729.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain #8 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 808904..819914
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OHP008_RS03880 (OHP008_07800) | - | 809002..809376 (-) | 375 | WP_000772151.1 | chemotaxis response regulator CheY | - |
| OHP008_RS03885 (OHP008_07810) | - | 809697..810269 (+) | 573 | WP_223888733.1 | outer membrane protein | - |
| OHP008_RS03895 (OHP008_07820) | - | 810401..810808 (-) | 408 | WP_223888734.1 | hypothetical protein | - |
| OHP008_RS03900 (OHP008_07830) | - | 810811..811041 (-) | 231 | WP_220998993.1 | PP0621 family protein | - |
| OHP008_RS03905 (OHP008_07840) | rsmG | 811035..811571 (-) | 537 | WP_223888735.1 | 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG | - |
| OHP008_RS03910 (OHP008_07850) | queA | 811568..812605 (-) | 1038 | WP_223888736.1 | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | - |
| OHP008_RS03915 (OHP008_07860) | tatC | 812609..813367 (-) | 759 | WP_219030526.1 | twin-arginine translocase subunit TatC | - |
| OHP008_RS03920 (OHP008_07870) | tatB | 813360..813836 (-) | 477 | WP_000467627.1 | Sec-independent protein translocase protein TatB | - |
| OHP008_RS03925 (OHP008_07880) | ruvB | 813904..814914 (-) | 1011 | WP_096396729.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| OHP008_RS03930 (OHP008_07890) | panB | 814915..815727 (-) | 813 | WP_223888737.1 | 3-methyl-2-oxobutanoate hydroxymethyltransferase | - |
| OHP008_RS03935 (OHP008_07900) | - | 815876..816598 (+) | 723 | WP_120929992.1 | hypothetical protein | - |
| OHP008_RS03940 (OHP008_07910) | - | 816588..817430 (+) | 843 | WP_223888738.1 | outer membrane beta-barrel protein | - |
| OHP008_RS03945 (OHP008_07920) | - | 817439..818383 (+) | 945 | WP_180401659.1 | outer membrane protein | - |
| OHP008_RS03950 (OHP008_07930) | - | 818393..819715 (+) | 1323 | WP_223888739.1 | M23 family metallopeptidase | - |
Sequence
Protein
Download Length: 336 a.a. Molecular weight: 37319.32 Da Isoelectric Point: 6.0715
>NTDB_id=76273 OHP008_RS03925 WP_096396729.1 813904..814914(-) (ruvB) [Helicobacter pylori strain #8]
MKERIVNLETLDFETSQEVSLRPNLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN
IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPVAQTIKIDLPPFTLIGATT
RAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAAKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLM
DLNITLHALNELGVNELGFDEADLAYLSLLANAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATPK
THALLKIPTLNPQTLF
MKERIVNLETLDFETSQEVSLRPNLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN
IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPVAQTIKIDLPPFTLIGATT
RAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAAKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLM
DLNITLHALNELGVNELGFDEADLAYLSLLANAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATPK
THALLKIPTLNPQTLF
Nucleotide
Download Length: 1011 bp
>NTDB_id=76273 OHP008_RS03925 WP_096396729.1 813904..814914(-) (ruvB) [Helicobacter pylori strain #8]
ATGAAAGAACGGATAGTCAATTTAGAAACTTTGGATTTTGAAACTTCTCAAGAAGTGAGTTTGCGTCCTAATCTTTGGGA
AGATTTTATCGGTCAAGAAAAGATTAAAAGCAATTTGCAAATTTCTATTTGCGCGGCTAAAAAACGCCAAGAAAGTTTGG
ATCACATGCTCTTTTTTGGCCCGCCCGGTTTGGGTAAAACTTCAATAAGCCATATCATCGCTAAAGAAATGGAAACCAAT
ATCAAAATCACCGCCGCTCCCATGATAGAAAAAAGCGGTGATTTGGCCGCCATTTTGACGAATTTGCAAGCTAAAGACAT
TCTTTTTATTGATGAAATCCACCGGCTTAGCCCAGCGATTGAAGAGGTTTTATACCCGGCTATGGAAGATTTCAGGTTGG
ATATTATCATAGGCTCAGGCCCAGTGGCTCAAACCATTAAAATTGATTTGCCTCCTTTCACCCTCATCGGCGCTACCACT
AGAGCCGGAATGCTCTCTAACCCCTTAAGAGACAGATTTGGCATGAGTTTTAGGATGCAATTTTATAGCCCTAGCGAACT
AGCCCTTATCATCAAAAAAGCCGCCGCTAAACTCAATCAAGACATCAAAGAAGAAAGCGCTGATGAAATCGCTAAAAGGA
GTAGAGGCACGCCAAGGATCGCTTTAAGGCTTTTAAAAAGGGTGCGCGATTTTGCGTTAGTCAAAAATTCAAGCTTGATG
GATTTAAACATCACTTTGCATGCTTTGAATGAATTAGGCGTGAATGAATTAGGCTTTGATGAAGCGGATTTGGCGTATTT
GTCTTTGTTGGCTAACGCTCAAGGACGACCGGTAGGTTTGAACACAATTGCTGCATCTATGAGAGAAGATGAAGGCACGA
TTGAAGATGTGATTGAGCCTTTTTTACTCGCTAATGGTTATTTAGAGCGCACCGCTAAAGGCAGAATCGCCACGCCTAAA
ACCCATGCGCTTTTAAAAATCCCCACTTTAAACCCCCAAACTTTATTTTAA
ATGAAAGAACGGATAGTCAATTTAGAAACTTTGGATTTTGAAACTTCTCAAGAAGTGAGTTTGCGTCCTAATCTTTGGGA
AGATTTTATCGGTCAAGAAAAGATTAAAAGCAATTTGCAAATTTCTATTTGCGCGGCTAAAAAACGCCAAGAAAGTTTGG
ATCACATGCTCTTTTTTGGCCCGCCCGGTTTGGGTAAAACTTCAATAAGCCATATCATCGCTAAAGAAATGGAAACCAAT
ATCAAAATCACCGCCGCTCCCATGATAGAAAAAAGCGGTGATTTGGCCGCCATTTTGACGAATTTGCAAGCTAAAGACAT
TCTTTTTATTGATGAAATCCACCGGCTTAGCCCAGCGATTGAAGAGGTTTTATACCCGGCTATGGAAGATTTCAGGTTGG
ATATTATCATAGGCTCAGGCCCAGTGGCTCAAACCATTAAAATTGATTTGCCTCCTTTCACCCTCATCGGCGCTACCACT
AGAGCCGGAATGCTCTCTAACCCCTTAAGAGACAGATTTGGCATGAGTTTTAGGATGCAATTTTATAGCCCTAGCGAACT
AGCCCTTATCATCAAAAAAGCCGCCGCTAAACTCAATCAAGACATCAAAGAAGAAAGCGCTGATGAAATCGCTAAAAGGA
GTAGAGGCACGCCAAGGATCGCTTTAAGGCTTTTAAAAAGGGTGCGCGATTTTGCGTTAGTCAAAAATTCAAGCTTGATG
GATTTAAACATCACTTTGCATGCTTTGAATGAATTAGGCGTGAATGAATTAGGCTTTGATGAAGCGGATTTGGCGTATTT
GTCTTTGTTGGCTAACGCTCAAGGACGACCGGTAGGTTTGAACACAATTGCTGCATCTATGAGAGAAGATGAAGGCACGA
TTGAAGATGTGATTGAGCCTTTTTTACTCGCTAATGGTTATTTAGAGCGCACCGCTAAAGGCAGAATCGCCACGCCTAAA
ACCCATGCGCTTTTAAAAATCCCCACTTTAAACCCCCAAACTTTATTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Helicobacter pylori 26695 |
97.619 |
100 |
0.976 |
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
53.56 |
96.131 |
0.515 |
| ruvB | Streptococcus pneumoniae TIGR4 |
50.464 |
96.131 |
0.485 |
| ruvB | Streptococcus pneumoniae R6 |
50.464 |
96.131 |
0.485 |
| ruvB | Streptococcus pneumoniae D39 |
50.464 |
96.131 |
0.485 |
| ruvB | Synechocystis sp. PCC 6803 |
50.789 |
94.345 |
0.479 |