Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OR605_RS00400 Genome accession   NZ_CP113522
Coordinates   84896..85396 (+) Length   166 a.a.
NCBI ID   WP_010907419.1    Uniprot ID   -
Organism   Pasteurella multocida strain PF13     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 79896..90396
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OR605_RS00385 (OR605_00385) rlmB 80439..81176 (+) 738 WP_005725044.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  OR605_RS00390 (OR605_00390) sodC 81262..81822 (-) 561 WP_267174460.1 superoxide dismutase [Cu-Zn] SodC -
  OR605_RS00395 (OR605_00395) uvrA 81893..84724 (-) 2832 WP_267174461.1 excinuclease ABC subunit UvrA -
  OR605_RS00400 (OR605_00400) ssb 84896..85396 (+) 501 WP_010907419.1 single-stranded DNA-binding protein Machinery gene
  OR605_RS00405 (OR605_00405) - 85546..86826 (+) 1281 WP_016533798.1 site-specific integrase -
  OR605_RS00410 (OR605_00410) - 86813..88333 (+) 1521 WP_267174462.1 site-specific integrase -
  OR605_RS00415 (OR605_00415) - 88336..90372 (+) 2037 WP_010907417.1 integrase -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18687.70 Da        Isoelectric Point: 5.3353

>NTDB_id=762703 OR605_RS00400 WP_010907419.1 84896..85396(+) (ssb) [Pasteurella multocida strain PF13]
MAGVNKVIIVGNLGNDPEIRTMPNGEAVANISVATSESWIDKNTNERREVTEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRNERQQTGGYAPQTAAPQYNAPTGSYGAQPSRPATKPAPQNEPPMDMGFE
EDNIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=762703 OR605_RS00400 WP_010907419.1 84896..85396(+) (ssb) [Pasteurella multocida strain PF13]
ATGGCTGGAGTAAATAAAGTAATTATTGTAGGAAACTTAGGTAACGATCCTGAAATCCGCACAATGCCAAATGGTGAAGC
CGTAGCCAATATCAGCGTCGCGACCAGTGAAAGCTGGATCGACAAAAATACTAACGAACGTCGTGAAGTCACCGAATGGC
ATCGCATCGTATTCTACCGTCGCCAAGCTGAAGTGGCTGGGGAATATCTGCGTAAAGGTTCAAAAGTGTATGTAGAGGGA
CGCCTAAAAACCCGTAAATGGCAAGACCAAAATGGGCAAGATCGCTACACTACCGAAATCCAAGGCGACGTGTTGCAAAT
GCTCGACAGCCGTAACGAACGTCAACAAACCGGCGGCTATGCCCCACAAACCGCTGCGCCACAATATAATGCCCCAACAG
GTAGCTACGGTGCACAACCTTCTCGTCCAGCGACAAAACCCGCTCCACAAAACGAACCTCCAATGGACATGGGCTTTGAG
GAAGATAATATTCCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

68.681

100

0.753
  ssb Vibrio cholerae strain A1552

54.144

100

0.59
  ssb Neisseria meningitidis MC58

44.068

100

0.47
  ssb Neisseria gonorrhoeae MS11

44.068

100

0.47