Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OU800_RS03455 Genome accession   NZ_CP113519
Coordinates   759915..760415 (+) Length   166 a.a.
NCBI ID   WP_268181186.1    Uniprot ID   -
Organism   Pseudomonas sp. GOM7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 754915..765415
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OU800_RS03445 (OU800_03445) uvrA 755440..758298 (-) 2859 WP_268181184.1 excinuclease ABC subunit UvrA -
  OU800_RS03450 (OU800_03450) - 758511..759905 (+) 1395 WP_268181185.1 MFS transporter -
  OU800_RS03455 (OU800_03455) ssb 759915..760415 (+) 501 WP_268181186.1 single-stranded DNA-binding protein Machinery gene
  OU800_RS03460 (OU800_03460) gstA 760474..761079 (-) 606 WP_268181187.1 glutathione transferase GstA -
  OU800_RS03465 (OU800_03465) - 761185..761598 (+) 414 WP_268181188.1 helix-turn-helix domain-containing protein -
  OU800_RS03470 (OU800_03470) - 761684..762568 (+) 885 WP_268181190.1 sugar nucleotide-binding protein -
  OU800_RS03475 (OU800_03475) - 762561..763484 (+) 924 WP_268181192.1 NAD-dependent epimerase/dehydratase family protein -
  OU800_RS03480 (OU800_03480) - 763549..764241 (-) 693 WP_268181194.1 OmpW family outer membrane protein -
  OU800_RS03485 (OU800_03485) - 764370..764891 (-) 522 WP_268181196.1 DUF3299 domain-containing protein -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18570.44 Da        Isoelectric Point: 5.3111

>NTDB_id=762671 OU800_RS03455 WP_268181186.1 759915..760415(+) (ssb) [Pseudomonas sp. GOM7]
MARGVNKVILIGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGQMQLLGGRPGGDEGGAPRQSRPAPQQREPQQSTPRQERPAPQQSQPAPDYDSF
DDDIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=762671 OU800_RS03455 WP_268181186.1 759915..760415(+) (ssb) [Pseudomonas sp. GOM7]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGATCGGCAACGTCGGCGGCGACCCGGAAACCCGCTACATGCCCAACGGCAA
CGCCGTGACCAACATCACCCTGGCCACCTCCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAGCAGGAGCGTACCGAGT
GGCACCGCGTGGTGTTCTTCGGGCGTCTGGCGGAAATCGCCGGTGAGTACCTGCGCAAGGGCTCGCAGGTGTATGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGGCAGGATGGTCAGGATCGTTACACCACCGAGATCGTGGTGGACATCAACGG
CCAGATGCAGTTGCTCGGTGGTCGTCCGGGTGGTGATGAAGGCGGTGCCCCGCGTCAATCGCGCCCGGCGCCGCAGCAGC
GTGAGCCGCAGCAGTCGACTCCGCGTCAGGAACGTCCGGCGCCGCAGCAATCGCAGCCGGCTCCGGACTACGATAGCTTC
GACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

59.116

100

0.645
  ssb Glaesserella parasuis strain SC1401

52.174

100

0.578
  ssb Neisseria meningitidis MC58

48.588

100

0.518
  ssb Neisseria gonorrhoeae MS11

48.588

100

0.518