Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   NM686_RS21720 Genome accession   NZ_CP113517
Coordinates   1353559..1354011 (-) Length   150 a.a.
NCBI ID   WP_255187043.1    Uniprot ID   -
Organism   Methylomonas rapida strain MP1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1348559..1359011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NM686_RS06335 (NM686_006335) - 1349008..1349559 (-) 552 WP_255187038.1 FlhC family transcriptional regulator -
  NM686_RS06340 (NM686_006340) - 1349556..1349867 (-) 312 WP_064027130.1 flagellar transcriptional regulator FlhD -
  NM686_RS06345 (NM686_006345) - 1349886..1350533 (-) 648 WP_255187039.1 transglycosylase SLT domain-containing protein -
  NM686_RS06350 (NM686_006350) - 1350803..1350973 (-) 171 WP_255187040.1 hypothetical protein -
  NM686_RS06355 (NM686_006355) - 1351306..1351818 (+) 513 WP_255187041.1 hypothetical protein -
  NM686_RS06360 (NM686_006360) - 1352124..1352624 (-) 501 WP_255188577.1 glutathione peroxidase -
  NM686_RS06365 (NM686_006365) - 1352630..1353343 (-) 714 WP_269022578.1 DUF5765 domain-containing protein -
  NM686_RS21720 comFC 1353559..1354011 (-) 453 WP_255187043.1 ComF family protein Machinery gene
  NM686_RS21725 - 1354075..1354260 (-) 186 Protein_1260 double zinc ribbon domain-containing protein -
  NM686_RS06375 (NM686_006375) bioB 1354332..1355321 (+) 990 WP_269022580.1 biotin synthase BioB -
  NM686_RS06380 (NM686_006380) bioF 1355321..1356481 (+) 1161 WP_255187044.1 8-amino-7-oxononanoate synthase -
  NM686_RS06385 (NM686_006385) bioH 1356478..1357239 (+) 762 WP_255187045.1 pimeloyl-ACP methyl ester esterase BioH -
  NM686_RS06390 (NM686_006390) bioC 1357269..1358030 (+) 762 WP_255187046.1 malonyl-ACP O-methyltransferase BioC -
  NM686_RS06395 (NM686_006395) bioD 1358030..1358722 (+) 693 WP_255187047.1 dethiobiotin synthase -

Sequence

Protein


Download         Length: 150 a.a.        Molecular weight: 17206.94 Da        Isoelectric Point: 10.8109

>NTDB_id=762665 NM686_RS21720 WP_255187043.1 1353559..1354011(-) (comFC) [Methylomonas rapida strain MP1]
MLRFLITQLKFNQRYLHARLLGNLLATHLEQTAELPECIIPVPLHRRRYQERGFNQSLEIARHLANRLSIPLDLNSCIRN
RNTAHQTELPAKQRRKNLRNAFSVISPLNHQHIVIVDDVMTTGATADALAQALKHHGVNRVDVWVCARAC

Nucleotide


Download         Length: 453 bp        

>NTDB_id=762665 NM686_RS21720 WP_255187043.1 1353559..1354011(-) (comFC) [Methylomonas rapida strain MP1]
TTGCTGCGATTTCTGATTACCCAGTTGAAATTCAACCAGCGCTATTTACACGCCCGCCTACTGGGCAACCTGCTGGCAAC
CCATCTTGAGCAAACGGCGGAGTTGCCGGAATGTATCATTCCCGTGCCCTTGCATCGCAGACGCTACCAAGAACGCGGTT
TCAATCAATCCCTGGAAATCGCCCGCCATCTGGCCAACCGGCTATCGATCCCGTTGGACTTAAACAGCTGCATACGCAAC
CGGAATACCGCTCATCAAACCGAATTGCCGGCCAAACAGCGCAGAAAAAACCTGAGAAATGCTTTCAGCGTAATCAGCCC
TCTAAACCATCAACACATCGTCATCGTCGATGACGTCATGACCACCGGCGCCACCGCCGACGCGCTGGCGCAAGCACTAA
AACACCATGGGGTTAACCGGGTAGACGTCTGGGTATGTGCCAGGGCTTGTTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(57-145)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Legionella pneumophila strain ERS1305867

48.649

98.667

0.48
  comFC Legionella pneumophila str. Paris

48.649

98.667

0.48
  comF Vibrio cholerae strain A1552

42.657

95.333

0.407
  comF Haemophilus influenzae 86-028NP

38.462

100

0.4
  comF Haemophilus influenzae Rd KW20

38.217

100

0.4