Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   OU809_RS18810 Genome accession   NZ_CP113516
Coordinates   3733161..3734318 (-) Length   385 a.a.
NCBI ID   WP_020453119.1    Uniprot ID   A0A6I7TVP7
Organism   Bacillus paralicheniformis strain 285-3     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3728161..3739318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OU809_RS18780 (OU809_18780) - 3728399..3728818 (-) 420 WP_020453114.1 TIGR03826 family flagellar region protein -
  OU809_RS18785 (OU809_18785) comFC 3728877..3729614 (-) 738 WP_026580174.1 ComF family protein Machinery gene
  OU809_RS18790 (OU809_18790) - 3729571..3729855 (-) 285 WP_020453116.1 late competence development ComFB family protein -
  OU809_RS18795 (OU809_18795) comFA 3729910..3731304 (-) 1395 WP_212110829.1 DEAD/DEAH box helicase Machinery gene
  OU809_RS18800 (OU809_18800) - 3731428..3732270 (-) 843 WP_020453118.1 DegV family protein -
  OU809_RS18805 (OU809_18805) degU 3732390..3733079 (-) 690 WP_003185730.1 two-component system response regulator DegU Regulator
  OU809_RS18810 (OU809_18810) degS 3733161..3734318 (-) 1158 WP_020453119.1 sensor histidine kinase Regulator
  OU809_RS18815 (OU809_18815) - 3734541..3735179 (+) 639 WP_023856394.1 YigZ family protein -
  OU809_RS18820 (OU809_18820) - 3735194..3736273 (+) 1080 WP_145645335.1 LCP family protein -
  OU809_RS18825 (OU809_18825) - 3736326..3736709 (-) 384 WP_145645337.1 hypothetical protein -
  OU809_RS18830 (OU809_18830) - 3736818..3737882 (-) 1065 WP_025810697.1 glycosyltransferase family 4 protein -
  OU809_RS18835 (OU809_18835) tuaH 3738013..3739200 (-) 1188 WP_026580178.1 teichuronic acid biosynthesis protein TuaH -

Sequence

Protein


Download         Length: 385 a.a.        Molecular weight: 44650.34 Da        Isoelectric Point: 6.7862

>NTDB_id=762633 OU809_RS18810 WP_020453119.1 3733161..3734318(-) (degS) [Bacillus paralicheniformis strain 285-3]
MSVSKMDSKVLDSIIMKMLKTVDGSKDEVFQIGEQSRQQYEGLVEELKQIKQQVNEVIDLGDRLEVHARHARNRLSEVSR
NFHKFSEEEIREAYEKAHKLQVELTMIQQREKQLREKRDDLERRLLGLQEIIERSEGLVSQITVVLNYLNQDLRQVGVLL
EDAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDKGTEEGFQEIRNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLNTIEDYHGKAKIHFQCIGESEDRRIAPRFEVALFRLAQEAVTNALKHSESTEIHVKVEV
TKDFVTLIIKDNGNGFDLKEVKGKKNKSFGLLGMKERVDLLEGSMTIDSKIGLGTFILIKVPLSL

Nucleotide


Download         Length: 1158 bp        

>NTDB_id=762633 OU809_RS18810 WP_020453119.1 3733161..3734318(-) (degS) [Bacillus paralicheniformis strain 285-3]
GTGAGTGTTTCCAAAATGGACTCCAAAGTTTTAGATTCAATCATTATGAAGATGTTAAAAACGGTTGATGGGAGCAAGGA
TGAGGTCTTTCAAATCGGAGAGCAGTCCCGTCAGCAATATGAAGGCTTGGTAGAAGAGCTGAAGCAGATTAAACAGCAGG
TCAACGAAGTCATCGATCTTGGAGACAGGCTGGAAGTGCATGCCCGCCATGCGCGAAACCGCTTGTCTGAGGTCAGCAGA
AACTTTCATAAATTCAGTGAAGAAGAGATTCGCGAAGCTTATGAAAAAGCCCACAAACTGCAGGTTGAACTGACGATGAT
CCAGCAGCGTGAAAAGCAGCTGAGAGAGAAGCGTGATGATCTGGAACGGCGCCTTTTGGGGCTTCAGGAAATCATCGAGC
GTTCAGAAGGGCTTGTCAGCCAGATTACCGTCGTCTTAAACTATTTAAATCAGGATCTGCGCCAGGTTGGCGTTCTCCTA
GAAGATGCGCAGGCCAAACAGGATTTCGGACTGCGGATCATCGAAGCCCAAGAGGAAGAAAGAAAAAGGGTCTCAAGGGA
AATCCACGACGGCCCTGCGCAAATGCTGGCCAACGTCATGATGAGATCTGAGCTGATCGAACGCATCTTCAGAGACAAAG
GAACAGAAGAAGGCTTTCAGGAAATTAGAAACCTCCGGCAAAACGTCAGAAATGCTCTTTATGAAGTCAGAAGAATCATT
TATGATTTAAGACCGATGGCTTTAGATGATTTGGGATTGATACCGACGCTCAGAAAATACTTGAACACGATCGAAGATTA
TCATGGAAAAGCAAAGATCCATTTCCAATGCATCGGAGAATCCGAAGATAGAAGAATAGCACCGCGGTTTGAGGTTGCAC
TTTTCCGGCTTGCACAGGAAGCAGTGACAAACGCCTTAAAACACTCCGAATCAACTGAGATTCATGTTAAAGTAGAAGTG
ACAAAAGATTTTGTGACGTTGATTATCAAAGACAATGGAAACGGCTTTGACTTAAAAGAAGTTAAAGGCAAGAAGAACAA
ATCTTTCGGTCTGCTAGGTATGAAAGAAAGAGTCGATTTGCTCGAAGGTTCAATGACAATCGATTCGAAAATAGGTCTTG
GGACATTTATTTTGATTAAAGTTCCGCTGTCTTTGTAA

Domains

Predicted by InterproScan.

Sensor protein DegS (DegS)

(12-170)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(292-384)

Histidine kinase (HisKA_3)

(180-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I7TVP7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

89.351

100

0.894