Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   OU809_RS18795 Genome accession   NZ_CP113516
Coordinates   3729910..3731304 (-) Length   464 a.a.
NCBI ID   WP_212110829.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain 285-3     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3724910..3736304
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OU809_RS18760 (OU809_18760) flgL 3725097..3726008 (-) 912 WP_026580172.1 flagellar hook-associated protein FlgL -
  OU809_RS18765 (OU809_18765) flgK 3726019..3727542 (-) 1524 WP_026580173.1 flagellar hook-associated protein FlgK -
  OU809_RS18770 (OU809_18770) - 3727558..3728034 (-) 477 WP_145646048.1 flagellar protein FlgN -
  OU809_RS18775 (OU809_18775) flgM 3728053..3728319 (-) 267 WP_003185713.1 flagellar biosynthesis anti-sigma factor FlgM -
  OU809_RS18780 (OU809_18780) - 3728399..3728818 (-) 420 WP_020453114.1 TIGR03826 family flagellar region protein -
  OU809_RS18785 (OU809_18785) comFC 3728877..3729614 (-) 738 WP_026580174.1 ComF family protein Machinery gene
  OU809_RS18790 (OU809_18790) - 3729571..3729855 (-) 285 WP_020453116.1 late competence development ComFB family protein -
  OU809_RS18795 (OU809_18795) comFA 3729910..3731304 (-) 1395 WP_212110829.1 DEAD/DEAH box helicase Machinery gene
  OU809_RS18800 (OU809_18800) - 3731428..3732270 (-) 843 WP_020453118.1 DegV family protein -
  OU809_RS18805 (OU809_18805) degU 3732390..3733079 (-) 690 WP_003185730.1 two-component system response regulator DegU Regulator
  OU809_RS18810 (OU809_18810) degS 3733161..3734318 (-) 1158 WP_020453119.1 sensor histidine kinase Regulator
  OU809_RS18815 (OU809_18815) - 3734541..3735179 (+) 639 WP_023856394.1 YigZ family protein -
  OU809_RS18820 (OU809_18820) - 3735194..3736273 (+) 1080 WP_145645335.1 LCP family protein -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 53059.88 Da        Isoelectric Point: 9.8915

>NTDB_id=762631 OU809_RS18795 WP_212110829.1 3729910..3731304(-) (comFA) [Bacillus paralicheniformis strain 285-3]
MIHIEHPASYSCELRSCLEQRHLLKSELPFPEPVIDWHIQEGLIKTEEGIKKTKRGFVCLRCGQHERFCFARYPCYRCNK
CCVYCRACVMMGRVSECTSLLTWRGHGRHEWAPVYTKWKGVLSAGQEKAAKSIIDAIRRKEELLIWAVCGSGKTELLFQG
IEFALNNGLRVCIATPRTDVVLELEPRFRHAFPGMEIAALYGGSPDVGTLSPLVISTTHQLLRYKEAFDVIIIDEVDAFP
YSIDNTLQYAVKKSAKRQSAHIYLTATPSRDMKKRAESGKLHTVRIPARFHRSPLPEPTLIWCGNWERGLKRRKVPLRLK
KWLFKHQELQHPVFLFVPSIPVLKTVVSLLKKETFRAEGVYAEDPERNEKVNRFRKSKLEVLVTTTILERGVTVKKAQVG
VLGAESAVFSESALVQMAGRAGRHPEHTDGDVCFFHHGRTKSMNAARRHIQYMNKLSKKEMLID

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=762631 OU809_RS18795 WP_212110829.1 3729910..3731304(-) (comFA) [Bacillus paralicheniformis strain 285-3]
GTGATTCACATCGAACATCCGGCATCCTATTCCTGTGAATTGCGGTCATGTTTGGAGCAGCGCCACCTTCTGAAAAGCGA
ACTTCCTTTTCCGGAACCTGTCATTGATTGGCATATCCAAGAAGGCCTGATAAAAACGGAGGAAGGCATTAAAAAAACGA
AGAGAGGCTTTGTTTGCTTGAGGTGCGGCCAGCACGAGCGCTTCTGTTTCGCTCGATATCCTTGCTATAGGTGCAATAAA
TGCTGCGTGTACTGCCGAGCCTGTGTCATGATGGGCAGGGTGAGCGAGTGTACGTCTCTGTTGACTTGGCGTGGACATGG
CAGACATGAATGGGCGCCTGTTTACACGAAGTGGAAAGGCGTACTTTCAGCCGGTCAGGAAAAAGCGGCAAAATCTATTA
TCGATGCTATACGCAGGAAAGAAGAGCTGTTGATCTGGGCGGTTTGCGGATCGGGAAAAACGGAACTTCTTTTTCAAGGG
ATCGAATTCGCGCTGAACAACGGTTTGAGAGTATGTATCGCCACTCCGAGAACAGACGTTGTGCTTGAGCTTGAACCGCG
GTTTCGCCACGCCTTTCCCGGGATGGAAATCGCCGCTTTATACGGAGGAAGCCCAGACGTTGGAACTCTCTCGCCGCTTG
TCATTTCAACTACCCACCAGCTGCTCCGCTATAAAGAAGCATTTGACGTGATCATCATAGATGAAGTGGATGCTTTTCCG
TATTCTATTGATAATACGCTGCAATACGCTGTTAAAAAATCGGCAAAACGGCAAAGCGCACATATCTATTTAACCGCCAC
GCCTTCTAGAGATATGAAGAAAAGGGCTGAGAGCGGAAAGCTGCACACCGTCCGTATTCCCGCAAGATTCCACCGCAGCC
CGCTGCCTGAACCTACATTGATTTGGTGCGGAAATTGGGAAAGGGGTTTGAAACGAAGAAAAGTTCCTTTACGCCTCAAA
AAATGGCTTTTTAAGCACCAGGAACTGCAGCATCCGGTTTTTCTGTTTGTTCCCTCTATCCCTGTTCTTAAAACCGTGGT
CAGTCTGCTGAAAAAGGAAACATTTCGCGCAGAAGGAGTCTATGCCGAAGACCCTGAGAGAAATGAAAAAGTGAACCGGT
TTAGGAAAAGTAAGCTTGAGGTGCTCGTGACGACAACGATTTTGGAAAGAGGTGTAACCGTCAAAAAAGCACAGGTTGGA
GTATTGGGGGCAGAGTCGGCTGTTTTTTCGGAAAGCGCTCTTGTCCAAATGGCCGGCAGAGCCGGCAGGCATCCTGAGCA
CACAGATGGAGACGTCTGTTTCTTTCATCACGGTAGGACAAAGTCGATGAATGCGGCACGACGTCATATTCAATATATGA
ATAAACTGTCTAAAAAGGAAATGTTGATTGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(318-424)

Type III restriction enzyme, res subunit (ResIII)

(122-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

57.205

98.707

0.565