Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   OU809_RS18785 Genome accession   NZ_CP113516
Coordinates   3728877..3729614 (-) Length   245 a.a.
NCBI ID   WP_026580174.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain 285-3     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3723877..3734614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OU809_RS18750 (OU809_18750) fliW 3724028..3724459 (-) 432 WP_023856387.1 flagellar assembly protein FliW -
  OU809_RS18755 (OU809_18755) - 3724481..3725047 (-) 567 WP_145646046.1 DUF6470 family protein -
  OU809_RS18760 (OU809_18760) flgL 3725097..3726008 (-) 912 WP_026580172.1 flagellar hook-associated protein FlgL -
  OU809_RS18765 (OU809_18765) flgK 3726019..3727542 (-) 1524 WP_026580173.1 flagellar hook-associated protein FlgK -
  OU809_RS18770 (OU809_18770) - 3727558..3728034 (-) 477 WP_145646048.1 flagellar protein FlgN -
  OU809_RS18775 (OU809_18775) flgM 3728053..3728319 (-) 267 WP_003185713.1 flagellar biosynthesis anti-sigma factor FlgM -
  OU809_RS18780 (OU809_18780) - 3728399..3728818 (-) 420 WP_020453114.1 TIGR03826 family flagellar region protein -
  OU809_RS18785 (OU809_18785) comFC 3728877..3729614 (-) 738 WP_026580174.1 ComF family protein Machinery gene
  OU809_RS18790 (OU809_18790) - 3729571..3729855 (-) 285 WP_020453116.1 late competence development ComFB family protein -
  OU809_RS18795 (OU809_18795) comFA 3729910..3731304 (-) 1395 WP_212110829.1 DEAD/DEAH box helicase Machinery gene
  OU809_RS18800 (OU809_18800) - 3731428..3732270 (-) 843 WP_020453118.1 DegV family protein -
  OU809_RS18805 (OU809_18805) degU 3732390..3733079 (-) 690 WP_003185730.1 two-component system response regulator DegU Regulator
  OU809_RS18810 (OU809_18810) degS 3733161..3734318 (-) 1158 WP_020453119.1 sensor histidine kinase Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 28124.81 Da        Isoelectric Point: 9.9151

>NTDB_id=762630 OU809_RS18785 WP_026580174.1 3728877..3729614(-) (comFC) [Bacillus paralicheniformis strain 285-3]
MTTRFAKAIEKGGNELHCLICEAPLLHSLSWRALFFLRSEEKICRACKDNFIRIEGRTVCPKCGRPQESEELCGDCLKWE
ADPLTRSLLRQNRSVYIYNTFMKEVLARFKFRGDAELVFAFAPLFINAFHQYYRRTPAVLVPIPLSEERKAERGFNQAER
LASLLKKPVMHPLIRIENEKQSKKSRKERIKPKTVFRTEKGSVKNLDIILIDDLYTTGATLHHAAACLMTSGEAKSVSSF
TLIRS

Nucleotide


Download         Length: 738 bp        

>NTDB_id=762630 OU809_RS18785 WP_026580174.1 3728877..3729614(-) (comFC) [Bacillus paralicheniformis strain 285-3]
ATGACAACCCGCTTTGCGAAAGCAATCGAAAAGGGAGGAAATGAACTGCATTGTTTAATTTGTGAAGCGCCTCTTTTACA
TTCTCTTTCATGGCGCGCTTTATTCTTTTTACGATCAGAAGAGAAAATATGCAGGGCATGTAAAGACAATTTTATCAGGA
TCGAAGGAAGAACGGTGTGCCCTAAGTGCGGGCGCCCCCAAGAGAGCGAAGAACTTTGCGGTGACTGCCTAAAATGGGAA
GCTGATCCGTTAACCCGCTCTCTTTTGAGGCAAAACCGCTCTGTCTATATCTACAATACCTTCATGAAAGAAGTCCTTGC
CCGTTTTAAGTTCAGAGGTGATGCTGAACTGGTCTTCGCTTTTGCTCCTTTATTTATCAATGCTTTCCACCAATATTACC
GCCGCACTCCAGCTGTTTTAGTTCCGATACCACTCAGTGAAGAACGTAAAGCGGAGCGGGGATTCAATCAGGCGGAGAGG
CTTGCTTCCTTATTAAAAAAACCCGTTATGCATCCTTTGATCAGAATCGAAAATGAAAAACAATCCAAAAAAAGCAGAAA
AGAACGGATCAAGCCCAAAACGGTTTTTAGAACCGAAAAGGGATCGGTAAAGAATCTGGATATCATATTGATCGACGACT
TGTATACGACAGGGGCGACCCTTCATCATGCCGCTGCTTGTCTGATGACATCCGGTGAGGCAAAATCTGTATCATCATTT
ACATTAATTCGAAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(17-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

53.782

97.143

0.522