Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   OU809_RS18805 Genome accession   NZ_CP113516
Coordinates   3732390..3733079 (-) Length   229 a.a.
NCBI ID   WP_003185730.1    Uniprot ID   Q5QSL6
Organism   Bacillus paralicheniformis strain 285-3     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3727390..3738079
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OU809_RS18770 (OU809_18770) - 3727558..3728034 (-) 477 WP_145646048.1 flagellar protein FlgN -
  OU809_RS18775 (OU809_18775) flgM 3728053..3728319 (-) 267 WP_003185713.1 flagellar biosynthesis anti-sigma factor FlgM -
  OU809_RS18780 (OU809_18780) - 3728399..3728818 (-) 420 WP_020453114.1 TIGR03826 family flagellar region protein -
  OU809_RS18785 (OU809_18785) comFC 3728877..3729614 (-) 738 WP_026580174.1 ComF family protein Machinery gene
  OU809_RS18790 (OU809_18790) - 3729571..3729855 (-) 285 WP_020453116.1 late competence development ComFB family protein -
  OU809_RS18795 (OU809_18795) comFA 3729910..3731304 (-) 1395 WP_212110829.1 DEAD/DEAH box helicase Machinery gene
  OU809_RS18800 (OU809_18800) - 3731428..3732270 (-) 843 WP_020453118.1 DegV family protein -
  OU809_RS18805 (OU809_18805) degU 3732390..3733079 (-) 690 WP_003185730.1 two-component system response regulator DegU Regulator
  OU809_RS18810 (OU809_18810) degS 3733161..3734318 (-) 1158 WP_020453119.1 sensor histidine kinase Regulator
  OU809_RS18815 (OU809_18815) - 3734541..3735179 (+) 639 WP_023856394.1 YigZ family protein -
  OU809_RS18820 (OU809_18820) - 3735194..3736273 (+) 1080 WP_145645335.1 LCP family protein -
  OU809_RS18825 (OU809_18825) - 3736326..3736709 (-) 384 WP_145645337.1 hypothetical protein -
  OU809_RS18830 (OU809_18830) - 3736818..3737882 (-) 1065 WP_025810697.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25842.50 Da        Isoelectric Point: 5.9436

>NTDB_id=762632 OU809_RS18805 WP_003185730.1 3732390..3733079(-) (degU) [Bacillus paralicheniformis strain 285-3]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVDLYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSSHAQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=762632 OU809_RS18805 WP_003185730.1 3732390..3733079(-) (degU) [Bacillus paralicheniformis strain 285-3]
GTGACTAAAGTAAATATTGTAATTATTGACGATCATCAGTTATTCCGTGAAGGTGTCAAACGGATTTTGGATTTCGAACC
TACCTTTGAGGTAGTGGCCGAAGGAGACGACGGAGATGAAGCGGCTCGCATTGTCGAGCACTACCATCCTGATGTGGTAA
TCATGGATATTAATATGCCGAATGTAAACGGCGTAGAAGCGACAAAACAACTGGTCGACTTGTATCCGGAATCAAAGGTT
ATTATTTTATCTATCCATGACGATGAAAACTATGTTACACATGCATTAAAAACAGGAGCCCGCGGCTATCTGCTGAAAGA
AATGGATGCCGACACGCTGATCGAAGCCGTGAAAGTTGTGGCTGAAGGCGGATCTTATCTGCATCCTAAGGTTACTCATA
ATCTTGTGAATGAATTCCGCCGTCTTGCAACAAGCGGTGTATCATCTCACGCTCAGCATGAAGTGTATCCGGAAATCCGG
AGACCTCTTCACATTCTTACCAGAAGGGAATGCGAGGTTCTGCAGATGCTGGCGGACGGAAAAAGCAACCGCGGAATCGG
CGAATCATTATTTATCAGTGAAAAAACGGTTAAAAACCATGTCAGCAACATCCTTCAAAAAATGAATGTAAACGACAGAA
CGCAGGCTGTCGTTGTAGCCATTAAAAATGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-118)

Bacterial regulatory proteins, luxR family (GerE)

(165-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5QSL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

98.69

100

0.987