Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   OU809_RS13290 Genome accession   NZ_CP113516
Coordinates   2675262..2675555 (-) Length   97 a.a.
NCBI ID   WP_039072846.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain 285-3     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2670262..2680555
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OU809_RS13245 (OU809_13245) tasA 2670639..2671433 (-) 795 WP_020452167.1 biofilm matrix protein TasA -
  OU809_RS13250 (OU809_13250) sipW 2671506..2672090 (-) 585 WP_020452168.1 signal peptidase I SipW -
  OU809_RS13255 (OU809_13255) tapA 2672087..2672815 (-) 729 WP_268050583.1 amyloid fiber anchoring/assembly protein TapA -
  OU809_RS13260 (OU809_13260) - 2673093..2673413 (+) 321 WP_023855188.1 YqzG/YhdC family protein -
  OU809_RS13265 (OU809_13265) - 2673443..2673625 (-) 183 WP_020452171.1 YqzE family protein -
  OU809_RS13270 (OU809_13270) comGG 2673714..2674079 (-) 366 WP_025811163.1 competence type IV pilus minor pilin ComGG -
  OU809_RS13275 (OU809_13275) comGF 2674091..2674579 (-) 489 WP_224067282.1 competence type IV pilus minor pilin ComGF -
  OU809_RS13280 (OU809_13280) comGE 2674488..2674835 (-) 348 WP_023855191.1 competence type IV pilus minor pilin ComGE -
  OU809_RS13285 (OU809_13285) comGD 2674819..2675256 (-) 438 WP_039072845.1 competence type IV pilus minor pilin ComGD -
  OU809_RS13290 (OU809_13290) comGC 2675262..2675555 (-) 294 WP_039072846.1 competence type IV pilus major pilin ComGC Machinery gene
  OU809_RS13295 (OU809_13295) comGB 2675569..2676603 (-) 1035 WP_039072847.1 competence type IV pilus assembly protein ComGB Machinery gene
  OU809_RS13300 (OU809_13300) comGA 2676593..2677657 (-) 1065 WP_039072848.1 competence type IV pilus ATPase ComGA Machinery gene
  OU809_RS13305 (OU809_13305) - 2677815..2678654 (-) 840 WP_039072849.1 STAS domain-containing protein -
  OU809_RS13315 (OU809_13315) - 2678896..2679273 (-) 378 WP_003183482.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  OU809_RS13320 (OU809_13320) - 2679484..2679729 (+) 246 WP_020452180.1 DUF2626 domain-containing protein -
  OU809_RS13325 (OU809_13325) - 2679765..2680403 (-) 639 WP_020452181.1 MBL fold metallo-hydrolase -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10698.59 Da        Isoelectric Point: 9.1200

>NTDB_id=762610 OU809_RS13290 WP_039072846.1 2675262..2675555(-) (comGC) [Bacillus paralicheniformis strain 285-3]
MNEKGFTLIEMLVVMLVISILLLITIPNVTKHNQSIQKKGCEGLINMVQAQITAYQMDHDGKTPSRADLESEGYVKKNLK
CPNGKVIKISNGKAQAD

Nucleotide


Download         Length: 294 bp        

>NTDB_id=762610 OU809_RS13290 WP_039072846.1 2675262..2675555(-) (comGC) [Bacillus paralicheniformis strain 285-3]
GTGAATGAAAAGGGATTTACACTGATAGAAATGTTAGTCGTCATGCTCGTCATCTCCATCCTGCTGTTGATCACCATACC
GAATGTGACCAAGCATAATCAAAGTATTCAAAAGAAAGGATGCGAAGGGTTAATTAATATGGTTCAAGCGCAAATCACGG
CTTATCAAATGGATCATGACGGGAAAACGCCGAGTAGGGCGGACCTTGAATCTGAAGGTTACGTGAAGAAGAACTTAAAG
TGCCCGAATGGGAAAGTAATTAAAATTTCAAACGGCAAAGCACAGGCTGATTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

71.134

100

0.711
  comGC Staphylococcus aureus MW2

45.263

97.938

0.443
  comGC Staphylococcus aureus N315

45.263

97.938

0.443