NTDB

Overview

Name	comGA	Type	Machinery gene
Locus tag	OU809_RS13300	Genome accession	NZ_CP113516
Coordinates	2676593..2677657 (-)	Length	354 a.a.
NCBI ID	WP_039072848.1	Uniprot ID	-
Organism	Bacillus paralicheniformis strain 285-3
Function	dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2671593..2682657

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OU809_RS13255 (OU809_13255)	tapA	2672087..2672815 (-)	729	WP_268050583.1	amyloid fiber anchoring/assembly protein TapA	-
OU809_RS13260 (OU809_13260)	-	2673093..2673413 (+)	321	WP_023855188.1	YqzG/YhdC family protein	-
OU809_RS13265 (OU809_13265)	-	2673443..2673625 (-)	183	WP_020452171.1	YqzE family protein	-
OU809_RS13270 (OU809_13270)	comGG	2673714..2674079 (-)	366	WP_025811163.1	competence type IV pilus minor pilin ComGG	-
OU809_RS13275 (OU809_13275)	comGF	2674091..2674579 (-)	489	WP_224067282.1	competence type IV pilus minor pilin ComGF	-
OU809_RS13280 (OU809_13280)	comGE	2674488..2674835 (-)	348	WP_023855191.1	competence type IV pilus minor pilin ComGE	-
OU809_RS13285 (OU809_13285)	comGD	2674819..2675256 (-)	438	WP_039072845.1	competence type IV pilus minor pilin ComGD	-
OU809_RS13290 (OU809_13290)	comGC	2675262..2675555 (-)	294	WP_039072846.1	competence type IV pilus major pilin ComGC	Machinery gene
OU809_RS13295 (OU809_13295)	comGB	2675569..2676603 (-)	1035	WP_039072847.1	competence type IV pilus assembly protein ComGB	Machinery gene
OU809_RS13300 (OU809_13300)	comGA	2676593..2677657 (-)	1065	WP_039072848.1	competence type IV pilus ATPase ComGA	Machinery gene
OU809_RS13305 (OU809_13305)	-	2677815..2678654 (-)	840	WP_039072849.1	STAS domain-containing protein	-
OU809_RS13315 (OU809_13315)	-	2678896..2679273 (-)	378	WP_003183482.1	Spx/MgsR family RNA polymerase-binding regulatory protein	-
OU809_RS13320 (OU809_13320)	-	2679484..2679729 (+)	246	WP_020452180.1	DUF2626 domain-containing protein	-
OU809_RS13325 (OU809_13325)	-	2679765..2680403 (-)	639	WP_020452181.1	MBL fold metallo-hydrolase	-
OU809_RS13330 (OU809_13330)	-	2680559..2680732 (+)	174	WP_003183486.1	DUF2759 domain-containing protein	-
OU809_RS13335 (OU809_13335)	-	2680793..2681107 (-)	315	WP_020452182.1	MTH1187 family thiamine-binding protein	-
OU809_RS13340 (OU809_13340)	-	2681123..2682232 (-)	1110	WP_026579308.1	hypothetical protein	-

Sequence

Protein

Download Length: 354 a.a. Molecular weight: 39838.33 Da Isoelectric Point: 9.1063

                                >NTDB_id=762612 OU809_RS13300 WP_039072848.1 2676593..2677657(-) (comGA) [Bacillus paralicheniformis strain 285-3]

MYTIESLSGRLIDEAYRMKASDIHIVPGEKEAVVRFRIDDELFQKERLTRNECSRLISHFKFLSSMDIGERRLPQSGALT

LYINRQPVHLRMSTLPTIHDESLVIRLLPKMSSKPLTKLSLFPSATFKLLSFLKHSHGLILFTGPTGSGKTTTLYSLIEY

AKRHFKRNIITLEDPVESRSENILQVQVNEKAGMTYSAGLKAVLRHDPDMIILGEIRDAETAQIAVRAALTGHLVLSSMH

AKNAKGAIYRLLEFGVDMTEIEQTLVAISAQRLVGLVCPFCGDNCSLYCRLSRPVRRASVFELLYGKSLNLCIEEAKGRC

GDIKTETLKTLIQKGIALGYLPSNTYERWIGHED

Nucleotide

Download Length: 1065 bp

                                >NTDB_id=762612 OU809_RS13300 WP_039072848.1 2676593..2677657(-) (comGA) [Bacillus paralicheniformis strain 285-3]

TTGTACACGATTGAATCATTAAGCGGAAGATTAATTGACGAGGCATATAGAATGAAGGCGTCAGACATTCATATTGTTCC

CGGTGAAAAAGAGGCGGTGGTTCGCTTCAGGATTGATGATGAACTTTTTCAAAAAGAAAGATTAACGAGAAATGAGTGCT

CAAGGCTCATTTCTCACTTTAAATTCCTTTCTTCGATGGATATTGGGGAAAGACGGCTGCCGCAAAGCGGAGCTTTGACT

CTTTATATCAACCGTCAGCCCGTTCATTTAAGAATGTCCACTCTGCCCACCATCCATGATGAAAGCTTGGTCATCAGGCT

TCTTCCCAAGATGAGCAGCAAGCCGCTCACAAAGCTCTCATTGTTTCCGAGTGCAACATTCAAGCTGCTGTCTTTTCTGA

AGCATTCCCACGGATTAATTCTGTTCACCGGTCCGACAGGCTCGGGGAAAACGACAACACTCTATTCTTTAATCGAATAC

GCTAAGCGGCATTTTAAGCGAAATATCATTACCTTGGAAGACCCTGTTGAATCAAGAAGCGAAAACATTTTGCAAGTGCA

AGTAAACGAAAAAGCTGGCATGACTTATTCTGCGGGGTTGAAGGCGGTGCTTCGCCACGATCCGGACATGATCATCCTCG

GGGAAATTCGCGATGCCGAAACAGCCCAAATCGCAGTCAGGGCAGCTTTGACAGGACACCTTGTTTTATCGAGCATGCAT

GCGAAAAATGCCAAAGGCGCAATATACAGGCTGCTCGAGTTCGGCGTTGATATGACAGAAATTGAACAAACACTGGTCGC

AATCAGCGCCCAGCGCCTCGTCGGTCTCGTCTGCCCGTTTTGCGGCGACAACTGCTCTTTATATTGCAGATTGTCGAGGC

CTGTAAGAAGAGCAAGCGTCTTCGAGCTTTTGTACGGAAAAAGCCTCAATCTCTGCATCGAAGAAGCAAAAGGCAGGTGC

GGTGACATAAAAACAGAAACATTGAAAACGCTGATTCAGAAGGGGATAGCACTCGGATATCTGCCGTCGAATACTTATGA

ACGCTGGATAGGCCATGAAGATTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-274)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comGA	Bacillus subtilis subsp. subtilis str. 168	67.797	100	0.678
pilB	Vibrio cholerae strain A1552	38.671	93.503	0.362

Detailed information NTG0762612