Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OQH41_RS18210 Genome accession   NZ_CP113442
Coordinates   3868233..3868559 (-) Length   108 a.a.
NCBI ID   WP_002126519.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain C9     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3863233..3873559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OQH41_RS18185 (OQH41_18185) hpt 3864029..3864556 (+) 528 WP_000214980.1 hypoxanthine phosphoribosyltransferase -
  OQH41_RS18190 (OQH41_18190) - 3864729..3864980 (+) 252 WP_000269732.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  OQH41_RS18195 (OQH41_18195) - 3865033..3865731 (-) 699 WP_000592161.1 DsbC family protein -
  OQH41_RS18200 (OQH41_18200) dmeF 3865827..3866807 (-) 981 WP_265615422.1 CDF family Co(II)/Ni(II) efflux transporter DmeF -
  OQH41_RS18205 (OQH41_18205) - 3866865..3867128 (+) 264 WP_000018128.1 metal/formaldehyde-sensitive transcriptional repressor -
  OQH41_RS18210 (OQH41_18210) ssb 3868233..3868559 (-) 327 WP_002126519.1 single-stranded DNA-binding protein Machinery gene
  OQH41_RS18215 (OQH41_18215) - 3868813..3871242 (-) 2430 WP_004745132.1 DUF927 domain-containing protein -
  OQH41_RS18220 (OQH41_18220) - 3871235..3871528 (-) 294 WP_004745131.1 hypothetical protein -
  OQH41_RS19395 - 3871521..3871766 (-) 246 WP_046693185.1 hypothetical protein -
  OQH41_RS18230 (OQH41_18230) - 3871913..3872236 (-) 324 WP_265615572.1 hypothetical protein -
  OQH41_RS18235 (OQH41_18235) - 3872247..3872615 (-) 369 WP_004745127.1 hypothetical protein -
  OQH41_RS18240 (OQH41_18240) - 3872608..3873117 (-) 510 WP_004745126.1 Bro-N domain-containing protein -
  OQH41_RS18245 (OQH41_18245) - 3873114..3873323 (-) 210 WP_004745125.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12234.94 Da        Isoelectric Point: 10.2394

>NTDB_id=762366 OQH41_RS18210 WP_002126519.1 3868233..3868559(-) (ssb) [Acinetobacter baumannii strain C9]
MPNVNKVTVMGVLGRDPETKQFPNGGSVTTFSVATTEFWKDKTTGERKEATEWHRITTSNRLAEIASKYLKKGGKVYIEG
SLRTRKWKDSKGAEKEITEIRADEMQLL

Nucleotide


Download         Length: 327 bp        

>NTDB_id=762366 OQH41_RS18210 WP_002126519.1 3868233..3868559(-) (ssb) [Acinetobacter baumannii strain C9]
ATGCCAAACGTAAACAAAGTAACTGTGATGGGTGTACTAGGTCGTGACCCTGAAACTAAACAATTTCCCAACGGCGGAAG
CGTTACCACATTCAGCGTTGCAACTACTGAGTTTTGGAAAGACAAGACTACAGGCGAGCGTAAAGAAGCTACAGAGTGGC
ATAGAATCACCACCAGCAACCGTTTAGCCGAGATTGCCAGTAAGTACCTCAAGAAAGGCGGAAAGGTGTATATCGAAGGC
TCATTGCGTACAAGGAAGTGGAAGGACAGCAAAGGGGCGGAAAAGGAAATAACCGAGATTCGAGCAGATGAGATGCAATT
GCTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

55.556

100

0.556
  ssb Neisseria gonorrhoeae MS11

51.887

98.148

0.509
  ssb Neisseria meningitidis MC58

51.887

98.148

0.509
  ssb Vibrio cholerae strain A1552

54.639

89.815

0.491