Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OXA86_RS01950 Genome accession   NZ_CP113439
Coordinates   430652..431131 (-) Length   159 a.a.
NCBI ID   WP_044497280.1    Uniprot ID   -
Organism   Legionella pneumophila strain PATHC002     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 425652..436131
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OXA86_RS01910 (OXA86_01910) rplO 425784..426218 (+) 435 WP_010946097.1 50S ribosomal protein L15 -
  OXA86_RS01915 (OXA86_01915) secY 426221..427549 (+) 1329 WP_014840959.1 preprotein translocase subunit SecY -
  OXA86_RS01920 (OXA86_01920) rpmJ 427566..427679 (+) 114 WP_010946099.1 50S ribosomal protein L36 -
  OXA86_RS01925 (OXA86_01925) rpsM 427757..428113 (+) 357 WP_010946100.1 30S ribosomal protein S13 -
  OXA86_RS01930 (OXA86_01930) rpsK 428137..428535 (+) 399 WP_010946101.1 30S ribosomal protein S11 -
  OXA86_RS01935 (OXA86_01935) rpsD 428552..429172 (+) 621 WP_010946102.1 30S ribosomal protein S4 -
  OXA86_RS01940 (OXA86_01940) - 429191..430183 (+) 993 WP_010946103.1 DNA-directed RNA polymerase subunit alpha -
  OXA86_RS01945 (OXA86_01945) rplQ 430202..430585 (+) 384 WP_010946104.1 50S ribosomal protein L17 -
  OXA86_RS01950 (OXA86_01950) ssb 430652..431131 (-) 480 WP_044497280.1 single-stranded DNA-binding protein Machinery gene
  OXA86_RS01955 (OXA86_01955) - 431218..432582 (-) 1365 WP_014840960.1 MFS transporter -
  OXA86_RS01960 (OXA86_01960) fabL 432744..433502 (+) 759 WP_014840961.1 enoyl-[acyl-carrier-protein] reductase FabL -
  OXA86_RS01965 (OXA86_01965) - 433573..433986 (+) 414 WP_010946108.1 acyl carrier protein -
  OXA86_RS01970 (OXA86_01970) - 433986..434882 (+) 897 WP_014840962.1 hydroxymyristoyl-ACP dehydratase -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 17602.35 Da        Isoelectric Point: 4.6616

>NTDB_id=762221 OXA86_RS01950 WP_044497280.1 430652..431131(-) (ssb) [Legionella pneumophila strain PATHC002]
MARGINKVILVGNVGADPDVRYLPNGSAVTTLSVATSETWKDKTTGEKQDRTEWHRVVCFNRLGEIAGEYIRKGSKLYVE
GSLRTRKWQDQQGQDRYTTEIVASDIQMLDSKGSSATNYDDMPSFQGSSTPQQASTKNQATPTSTAQDAFDELDDDIPF

Nucleotide


Download         Length: 480 bp        

>NTDB_id=762221 OXA86_RS01950 WP_044497280.1 430652..431131(-) (ssb) [Legionella pneumophila strain PATHC002]
ATGGCAAGAGGAATAAATAAAGTAATACTTGTTGGTAATGTAGGGGCAGATCCTGATGTAAGGTATTTGCCTAACGGAAG
TGCTGTTACTACACTTTCAGTTGCTACCAGTGAAACATGGAAAGACAAAACGACAGGTGAAAAACAAGATAGAACTGAAT
GGCACAGAGTAGTCTGTTTTAATCGTCTGGGTGAAATAGCTGGAGAATACATTCGCAAAGGTTCCAAGCTATATGTCGAA
GGGAGCTTAAGAACAAGAAAATGGCAAGATCAACAGGGCCAAGATAGATATACAACTGAAATTGTTGCGTCTGACATTCA
AATGCTCGATAGCAAAGGAAGTAGTGCCACTAATTACGACGACATGCCTTCATTTCAGGGAAGCTCTACCCCTCAACAAG
CTTCAACAAAAAATCAAGCAACACCAACATCTACTGCACAAGATGCTTTTGATGAATTAGATGATGATATACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.273

100

0.579
  ssb Vibrio cholerae strain A1552

49.714

100

0.547
  ssb Neisseria gonorrhoeae MS11

39.655

100

0.434
  ssb Neisseria meningitidis MC58

39.655

100

0.434