Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   OXA87_RS11835 Genome accession   NZ_CP113435
Coordinates   2684129..2684833 (+) Length   234 a.a.
NCBI ID   WP_368664487.1    Uniprot ID   -
Organism   Legionella pneumophila strain PATHC025     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2679129..2689833
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OXA87_RS11810 (OXA87_11810) - 2680362..2681240 (+) 879 WP_011947171.1 lpg2327 family Dot/Icm T4SS effector -
  OXA87_RS11815 (OXA87_11815) - 2681503..2681886 (+) 384 WP_011947172.1 hypothetical protein -
  OXA87_RS11820 (OXA87_11820) - 2682080..2682310 (+) 231 WP_010948035.1 exodeoxyribonuclease VII small subunit -
  OXA87_RS11825 (OXA87_11825) - 2682291..2683187 (+) 897 WP_027219254.1 polyprenyl synthetase family protein -
  OXA87_RS11830 (OXA87_11830) bioC 2683231..2684085 (-) 855 WP_011947175.1 malonyl-ACP O-methyltransferase BioC -
  OXA87_RS11835 (OXA87_11835) comFC 2684129..2684833 (+) 705 WP_368664487.1 ComF family protein Machinery gene
  OXA87_RS11840 (OXA87_11840) - 2684862..2685935 (-) 1074 WP_011947177.1 M50 family metallopeptidase -
  OXA87_RS11845 (OXA87_11845) - 2685992..2686270 (-) 279 WP_010948040.1 hypothetical protein -
  OXA87_RS11850 (OXA87_11850) - 2686309..2686467 (+) 159 WP_229293966.1 hypothetical protein -
  OXA87_RS11855 (OXA87_11855) hemA 2686591..2687865 (+) 1275 WP_013101756.1 glutamyl-tRNA reductase -
  OXA87_RS11860 (OXA87_11860) prfA 2687849..2688937 (+) 1089 WP_011947180.1 peptide chain release factor 1 -
  OXA87_RS11865 (OXA87_11865) prmC 2688930..2689793 (+) 864 WP_011947181.1 peptide chain release factor N(5)-glutamine methyltransferase -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26875.52 Da        Isoelectric Point: 9.3959

>NTDB_id=762084 OXA87_RS11835 WP_368664487.1 2684129..2684833(+) (comFC) [Legionella pneumophila strain PATHC025]
MLQKFLSITQNLRLPSICTLCNQFHKSQLAVCSNCIEFMKQLGSCCQYCAYPLSDDTYLVCGQCVRKRPSFDRAYIAYRF
EEPLRNLIHQFKYHNGLYLASFLKQLLLDALPKSALKPDCLIPVPMHPKRLKRRGFNQAAVLTRLLARQLKIPYDLYYCQ
KIINTASQANLDGEQRRKNLRHAFYVSPVTYEHVMIVDDLLTTGSTANEMAHTLKNAGVKRVDICCCARTVTKN

Nucleotide


Download         Length: 705 bp        

>NTDB_id=762084 OXA87_RS11835 WP_368664487.1 2684129..2684833(+) (comFC) [Legionella pneumophila strain PATHC025]
GTGCTCCAAAAATTCTTAAGTATAACACAGAACTTACGGTTACCTTCAATATGCACTCTTTGCAACCAGTTTCACAAAAG
CCAACTTGCAGTTTGCTCTAATTGCATAGAGTTTATGAAACAACTTGGATCTTGCTGTCAGTACTGTGCCTACCCCCTTT
CTGATGATACGTATCTGGTTTGTGGTCAATGCGTTAGAAAAAGGCCCTCCTTTGATAGGGCTTATATAGCGTATCGTTTT
GAAGAACCTCTGCGTAATTTAATACATCAGTTTAAATACCATAATGGCCTTTATCTGGCCTCGTTTCTAAAGCAATTACT
TCTTGATGCCTTACCCAAAAGCGCATTGAAACCAGATTGCCTAATTCCCGTTCCCATGCATCCCAAACGATTAAAACGAA
GGGGATTTAACCAGGCTGCTGTATTAACCAGATTATTAGCTCGTCAATTAAAAATCCCTTATGATTTATATTATTGCCAA
AAAATAATCAATACCGCTTCACAAGCCAACCTTGATGGAGAGCAACGAAGGAAAAATTTACGTCATGCATTTTATGTATC
ACCTGTAACTTATGAACACGTCATGATTGTTGATGACTTATTAACCACAGGCAGCACAGCCAATGAAATGGCACATACAT
TAAAAAATGCCGGAGTTAAGAGAGTAGATATATGTTGTTGTGCGCGGACTGTAACTAAAAATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(140-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Legionella pneumophila str. Paris

96.581

100

0.966
  comFC Legionella pneumophila strain ERS1305867

96.429

83.761

0.808