Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   QMA14_RS05145 Genome accession   NZ_CP125087
Coordinates   1037503..1038510 (+) Length   335 a.a.
NCBI ID   WP_049380420.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain EL1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1032503..1043510
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMA14_RS05115 (QMA14_05115) - 1033097..1034389 (+) 1293 WP_284174469.1 NRAMP family divalent metal transporter -
  QMA14_RS05120 (QMA14_05120) nudB 1034497..1034967 (+) 471 WP_102703686.1 dihydroneopterin triphosphate diphosphatase -
  QMA14_RS05125 (QMA14_05125) - 1035003..1035743 (+) 741 WP_005697071.1 YebC/PmpR family DNA-binding transcriptional regulator -
  QMA14_RS05130 (QMA14_05130) - 1035761..1036195 (+) 435 WP_102703687.1 hypothetical protein -
  QMA14_RS05135 (QMA14_05135) ruvC 1036246..1036818 (+) 573 WP_005697069.1 crossover junction endodeoxyribonuclease RuvC -
  QMA14_RS05140 (QMA14_05140) ruvA 1036878..1037489 (+) 612 WP_049380421.1 Holliday junction branch migration protein RuvA Machinery gene
  QMA14_RS05145 (QMA14_05145) ruvB 1037503..1038510 (+) 1008 WP_049380420.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  QMA14_RS05150 (QMA14_05150) - 1038566..1038877 (-) 312 WP_115911222.1 DUF5339 domain-containing protein -
  QMA14_RS05155 (QMA14_05155) - 1039332..1040897 (+) 1566 WP_284174470.1 cytochrome ubiquinol oxidase subunit I -
  QMA14_RS05160 (QMA14_05160) cydB 1040912..1042051 (+) 1140 WP_284174471.1 cytochrome d ubiquinol oxidase subunit II -
  QMA14_RS05165 (QMA14_05165) ybgE 1042164..1042451 (+) 288 WP_049370504.1 cyd operon protein YbgE -
  QMA14_RS05170 (QMA14_05170) ybgC 1042523..1042951 (+) 429 WP_193387027.1 tol-pal system-associated acyl-CoA thioesterase -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 37153.59 Da        Isoelectric Point: 4.7914

>NTDB_id=761812 QMA14_RS05145 WP_049380420.1 1037503..1038510(+) (ruvB) [Haemophilus parainfluenzae strain EL1]
MIEADRIISSQVKMDEDVIDRAIRPKLLADYVGQPQVREQMDIFIKAAKLRQDALDHLLIFGPPGLGKTTLANIVANEMG
VNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGA
TTRAGSLTSPLRDRFGIVQRLEFYSVEDLTSIVTRSASCLNLELEDKAAFEVARRSRGTPRIANRLLRRVRDFADVRNDG
IISASIAKQALSMLDVDDAGFDYLDRKLLTAVIERFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTPRGRIA
TSLTYRHFGLQKPSE

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=761812 QMA14_RS05145 WP_049380420.1 1037503..1038510(+) (ruvB) [Haemophilus parainfluenzae strain EL1]
ATGATCGAAGCAGATAGAATTATTAGCAGTCAGGTAAAGATGGATGAAGATGTCATCGATCGTGCGATTCGTCCAAAGCT
TTTAGCGGACTATGTGGGACAACCACAAGTGCGAGAACAGATGGATATTTTTATTAAAGCCGCGAAATTGCGTCAAGATG
CCTTAGATCATCTTTTGATTTTTGGTCCCCCAGGATTAGGAAAAACAACTTTAGCTAATATTGTCGCAAATGAAATGGGC
GTGAATATCCGTACCACATCCGGCCCAGTACTTGAGAAAGCCGGGGATTTAGCGGCAATGCTGACAAATCTAGAACCACA
TGATGTGCTGTTTATTGATGAAATTCATCGTCTTTCACCAGCGATTGAAGAAGTACTTTACCCCGCAATGGAAGATTATC
AGCTAGATATTATGATTGGTGAAGGCCCTGCTGCGCGTTCAATTAAATTAGATTTGCCACCTTTTACATTAATTGGTGCT
ACAACCAGAGCAGGTTCGTTAACTTCACCATTGCGTGATCGTTTCGGAATCGTTCAACGTTTAGAATTTTATTCCGTTGA
AGATTTAACTTCTATTGTGACAAGAAGTGCCTCTTGCTTAAATCTAGAATTAGAAGATAAAGCCGCTTTTGAAGTGGCAC
GCCGCTCACGTGGTACGCCCCGTATTGCAAACCGTTTATTACGTCGAGTGCGAGATTTTGCGGATGTGCGCAATGATGGC
ATTATTTCAGCAAGCATTGCAAAACAAGCACTTTCAATGTTGGATGTCGATGATGCAGGCTTTGATTACTTAGACCGAAA
ATTGCTCACGGCAGTGATAGAACGTTTTGATGGTGGCCCAGTTGGATTAGATAACTTAGCCGCAGCAATAGGTGAAGAGC
GAGACACTATCGAAGATGTGCTAGAACCTTATTTGATTCAACAAGGCTTTTTACAGCGTACGCCTCGAGGGCGAATTGCG
ACTTCGTTAACTTATCGACACTTCGGACTTCAGAAGCCATCAGAATAA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(23-181)

RuvB AAA lid domain (AAA_lid_4)

(184-257)

RuvB C-terminal winged helix domain (WHD_RuvB)

(259-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

62.918

98.209

0.618
  ruvB Streptococcus pneumoniae R6

58.589

97.313

0.57
  ruvB Streptococcus pneumoniae D39

58.589

97.313

0.57
  ruvB Streptococcus pneumoniae TIGR4

58.589

97.313

0.57
  ruvB Synechocystis sp. PCC 6803

51.796

99.701

0.516
  ruvB Helicobacter pylori 26695

55.921

90.746

0.507