Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | LDM85_RS02460 | Genome accession | NZ_AP024963 |
| Coordinates | 503351..504361 (-) | Length | 336 a.a. |
| NCBI ID | WP_212862118.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain #5 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 498351..509361
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LDM85_RS02415 (OHP005_04980) | - | 498437..498811 (-) | 375 | WP_000772153.1 | chemotaxis response regulator CheY | - |
| LDM85_RS02420 (OHP005_04990) | - | 499102..499704 (+) | 603 | WP_000291636.1 | outer membrane protein | - |
| LDM85_RS02430 (OHP005_05000) | - | 499836..500243 (-) | 408 | WP_130795355.1 | hypothetical protein | - |
| LDM85_RS02435 (OHP005_05010) | - | 500246..500488 (-) | 243 | WP_165442403.1 | PP0621 family protein | - |
| LDM85_RS02440 (OHP005_05020) | rsmG | 500482..501018 (-) | 537 | WP_001068805.1 | 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG | - |
| LDM85_RS02445 (OHP005_05030) | queA | 501015..502052 (-) | 1038 | WP_223887773.1 | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | - |
| LDM85_RS02450 (OHP005_05040) | tatC | 502053..502814 (-) | 762 | WP_223887774.1 | twin-arginine translocase subunit TatC | - |
| LDM85_RS02455 (OHP005_05050) | tatB | 502807..503283 (-) | 477 | WP_223887775.1 | Sec-independent protein translocase protein TatB | - |
| LDM85_RS02460 (OHP005_05060) | ruvB | 503351..504361 (-) | 1011 | WP_212862118.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| LDM85_RS02465 (OHP005_05070) | panB | 504362..505174 (-) | 813 | WP_223887776.1 | 3-methyl-2-oxobutanoate hydroxymethyltransferase | - |
| LDM85_RS02470 (OHP005_05080) | - | 505323..506045 (+) | 723 | WP_223887777.1 | hypothetical protein | - |
| LDM85_RS02475 (OHP005_05090) | - | 506035..506889 (+) | 855 | WP_223887778.1 | outer membrane beta-barrel protein | - |
| LDM85_RS02480 (OHP005_05100) | - | 506898..507842 (+) | 945 | WP_223887779.1 | outer membrane beta-barrel protein | - |
| LDM85_RS02485 (OHP005_05110) | - | 507852..509174 (+) | 1323 | WP_223887780.1 | M23 family metallopeptidase | - |
Sequence
Protein
Download Length: 336 a.a. Molecular weight: 37305.30 Da Isoelectric Point: 6.0715
>NTDB_id=76174 LDM85_RS02460 WP_212862118.1 503351..504361(-) (ruvB) [Helicobacter pylori strain #5]
MKERIVNLETLDFEISQEVSLRPNLWEDYIGQEKIKSNLQVSICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN
IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATT
RAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAAKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLM
DLNITLHALNELGVNELGFDEADLAYLSLLANAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATPK
THALLKIPTLNPQTLF
MKERIVNLETLDFEISQEVSLRPNLWEDYIGQEKIKSNLQVSICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN
IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATT
RAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAAKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLM
DLNITLHALNELGVNELGFDEADLAYLSLLANAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATPK
THALLKIPTLNPQTLF
Nucleotide
Download Length: 1011 bp
>NTDB_id=76174 LDM85_RS02460 WP_212862118.1 503351..504361(-) (ruvB) [Helicobacter pylori strain #5]
ATGAAAGAACGGATAGTCAATTTAGAAACTTTGGATTTTGAAATTTCTCAAGAAGTGAGTTTGCGCCCTAATCTTTGGGA
AGATTACATCGGTCAAGAAAAGATTAAAAGCAATTTGCAAGTTTCTATTTGCGCGGCTAAAAAACGCCAAGAAAGTTTGG
ATCACATGCTCTTTTTTGGCCCACCCGGTTTGGGTAAAACTTCAATAAGCCATATCATCGCTAAAGAAATGGAAACCAAT
ATCAAAATCACCGCCGCTCCCATGATAGAAAAAAGCGGTGATTTGGCCGCCATTTTGACCAATTTGCAAGCTAAAGACAT
TCTTTTTATTGATGAAATCCACCGGCTTAGCCCAGCGATTGAAGAGGTTTTATACCCGGCTATGGAGGATTTCAGGCTGG
ATATTATCATAGGCTCAGGCCCGGCCGCTCAAACCATTAAAATTGATTTGCCCCCTTTCACTCTCATCGGTGCTACCACT
AGAGCCGGAATGCTCTCTAACCCCTTAAGAGACAGATTTGGCATGAGCTTTAGAATGCAATTTTATAGCCCTAGCGAACT
AGCCCTTATCATCAAAAAAGCCGCCGCCAAACTCAACCAAGACATCAAAGAAGAAAGCGCTGATGAAATCGCTAAAAGGA
GTAGAGGCACGCCAAGGATCGCTTTAAGGCTTTTAAAAAGGGTGCGCGATTTTGCGTTAGTCAAAAATTCAAGCTTGATG
GATTTAAACATCACTTTGCATGCTTTGAATGAATTAGGCGTGAATGAATTAGGCTTTGATGAAGCGGATTTGGCGTATTT
GTCTTTGTTGGCTAACGCTCAAGGACGACCGGTGGGTTTGAACACGATTGCAGCATCTATGAGAGAAGATGAAGGCACGA
TTGAAGATGTGATTGAGCCTTTTTTACTCGCTAATGGTTATTTAGAACGCACCGCTAAAGGCAGAATCGCCACGCCTAAA
ACCCATGCACTTTTAAAAATCCCCACTTTAAACCCTCAAACTTTATTTTAA
ATGAAAGAACGGATAGTCAATTTAGAAACTTTGGATTTTGAAATTTCTCAAGAAGTGAGTTTGCGCCCTAATCTTTGGGA
AGATTACATCGGTCAAGAAAAGATTAAAAGCAATTTGCAAGTTTCTATTTGCGCGGCTAAAAAACGCCAAGAAAGTTTGG
ATCACATGCTCTTTTTTGGCCCACCCGGTTTGGGTAAAACTTCAATAAGCCATATCATCGCTAAAGAAATGGAAACCAAT
ATCAAAATCACCGCCGCTCCCATGATAGAAAAAAGCGGTGATTTGGCCGCCATTTTGACCAATTTGCAAGCTAAAGACAT
TCTTTTTATTGATGAAATCCACCGGCTTAGCCCAGCGATTGAAGAGGTTTTATACCCGGCTATGGAGGATTTCAGGCTGG
ATATTATCATAGGCTCAGGCCCGGCCGCTCAAACCATTAAAATTGATTTGCCCCCTTTCACTCTCATCGGTGCTACCACT
AGAGCCGGAATGCTCTCTAACCCCTTAAGAGACAGATTTGGCATGAGCTTTAGAATGCAATTTTATAGCCCTAGCGAACT
AGCCCTTATCATCAAAAAAGCCGCCGCCAAACTCAACCAAGACATCAAAGAAGAAAGCGCTGATGAAATCGCTAAAAGGA
GTAGAGGCACGCCAAGGATCGCTTTAAGGCTTTTAAAAAGGGTGCGCGATTTTGCGTTAGTCAAAAATTCAAGCTTGATG
GATTTAAACATCACTTTGCATGCTTTGAATGAATTAGGCGTGAATGAATTAGGCTTTGATGAAGCGGATTTGGCGTATTT
GTCTTTGTTGGCTAACGCTCAAGGACGACCGGTGGGTTTGAACACGATTGCAGCATCTATGAGAGAAGATGAAGGCACGA
TTGAAGATGTGATTGAGCCTTTTTTACTCGCTAATGGTTATTTAGAACGCACCGCTAAAGGCAGAATCGCCACGCCTAAA
ACCCATGCACTTTTAAAAATCCCCACTTTAAACCCTCAAACTTTATTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Helicobacter pylori 26695 |
97.619 |
100 |
0.976 |
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
54.18 |
96.131 |
0.521 |
| ruvB | Streptococcus pneumoniae TIGR4 |
50.464 |
96.131 |
0.485 |
| ruvB | Streptococcus pneumoniae R6 |
50.464 |
96.131 |
0.485 |
| ruvB | Streptococcus pneumoniae D39 |
50.464 |
96.131 |
0.485 |
| ruvB | Synechocystis sp. PCC 6803 |
50.789 |
94.345 |
0.479 |