Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   QIY60_RS24365 Genome accession   NZ_CP124863
Coordinates   5472354..5473433 (+) Length   359 a.a.
NCBI ID   WP_283146055.1    Uniprot ID   -
Organism   Streptomyces sp. BPTC-684     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5467354..5478433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QIY60_RS24335 (QIY60_24335) - 5468035..5468586 (+) 552 WP_283144322.1 hypothetical protein -
  QIY60_RS24340 (QIY60_24340) pdxS 5468725..5469639 (+) 915 WP_283144323.1 pyridoxal 5'-phosphate synthase lyase subunit PdxS -
  QIY60_RS24345 (QIY60_24345) pdxT 5469659..5470246 (+) 588 WP_283144324.1 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT -
  QIY60_RS24350 (QIY60_24350) - 5470309..5471061 (+) 753 WP_101387404.1 YebC/PmpR family DNA-binding transcriptional regulator -
  QIY60_RS24355 (QIY60_24355) ruvC 5471181..5471726 (+) 546 WP_283144325.1 crossover junction endodeoxyribonuclease RuvC -
  QIY60_RS24360 (QIY60_24360) ruvA 5471723..5472328 (+) 606 WP_283144326.1 Holliday junction branch migration protein RuvA -
  QIY60_RS24365 (QIY60_24365) ruvB 5472354..5473433 (+) 1080 WP_283146055.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  QIY60_RS24370 (QIY60_24370) yajC 5473603..5474064 (+) 462 WP_283144327.1 preprotein translocase subunit YajC -
  QIY60_RS24375 (QIY60_24375) secD 5474209..5475966 (+) 1758 WP_283144328.1 protein translocase subunit SecD -
  QIY60_RS24380 (QIY60_24380) secF 5475968..5477077 (+) 1110 WP_283144329.1 protein translocase subunit SecF -
  QIY60_RS24385 (QIY60_24385) - 5477074..5477616 (+) 543 WP_283144330.1 adenine phosphoribosyltransferase -

Sequence

Protein


Download         Length: 359 a.a.        Molecular weight: 38324.84 Da        Isoelectric Point: 4.8930

>NTDB_id=761691 QIY60_RS24365 WP_283146055.1 5472354..5473433(+) (ruvB) [Streptomyces sp. BPTC-684]
MNWDETGADATDPRLVDSVADGEDQAVEAALRPKDLEEFVGQEKVREQLDLVLRAARARGATADHVLLSGAPGLGKTTLS
MIIAAEMGAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDVIVGKGPGATAIPLEL
PPFTLVGATTRAGLLPPPLRDRFGFTGHMEFYEPAELERVIHRSARLLDVEIDLAGAAEIAGRSRGTPRIANRLLRRVRD
YAQVKADGVITREIAAAALRVYEVDARGLDRLDRAVLQALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPFLVREGLLA
RTPRGRVATPAAWAHLGLVPPQQGPGGVSGSGQQGLFGP

Nucleotide


Download         Length: 1080 bp        

>NTDB_id=761691 QIY60_RS24365 WP_283146055.1 5472354..5473433(+) (ruvB) [Streptomyces sp. BPTC-684]
ATGAACTGGGACGAGACCGGAGCCGACGCCACCGACCCGAGGCTGGTCGACTCGGTGGCCGACGGCGAGGACCAGGCCGT
GGAGGCCGCCCTGCGCCCCAAGGACCTGGAGGAGTTCGTCGGCCAGGAGAAGGTCCGCGAGCAGCTCGACCTGGTGCTGC
GGGCCGCCCGCGCGCGCGGCGCCACCGCCGACCACGTGCTGCTCTCGGGCGCCCCCGGCCTCGGCAAGACCACGCTCTCG
ATGATCATCGCGGCCGAGATGGGCGCCCCCATCCGGATCACCAGCGGCCCGGCGATCCAGCACGCGGGCGACCTCGCCGC
GATCCTCTCCTCCCTCCAGGAGGGTGAAGTCCTCTTCCTAGACGAGATCCACCGGATGTCGCGCCCCGCCGAGGAGATGC
TCTACATGGCGATGGAGGACTTCCGGGTCGACGTCATCGTCGGCAAGGGCCCCGGCGCCACCGCCATCCCGCTGGAGCTG
CCCCCGTTCACCCTGGTCGGCGCCACCACGCGCGCGGGGCTGCTGCCGCCCCCGCTGCGCGACCGCTTCGGCTTCACCGG
GCACATGGAGTTCTACGAGCCCGCCGAGCTGGAGCGGGTGATCCACCGCTCGGCCCGCCTCCTCGACGTGGAGATCGACC
TGGCGGGCGCGGCCGAGATCGCCGGCCGCTCGCGCGGCACGCCCCGTATCGCCAACCGGCTGCTGCGCCGCGTCAGGGAC
TACGCGCAGGTCAAGGCCGACGGCGTGATCACCCGCGAGATCGCGGCGGCGGCCCTGCGGGTCTACGAGGTGGACGCCCG
CGGTCTGGACCGGTTGGACCGGGCGGTGCTGCAGGCCTTGCTGAAACTGTTCGGCGGCGGCCCGGTCGGCCTGTCCACGC
TGGCGGTCGCCGTGGGGGAGGAGCGCGAGACCGTCGAGGAGGTGGCCGAGCCCTTCCTCGTAAGGGAAGGCCTGCTCGCG
CGGACCCCGCGCGGGCGCGTCGCCACCCCCGCCGCCTGGGCGCACCTGGGCCTGGTCCCGCCCCAGCAGGGCCCGGGCGG
CGTCTCAGGGAGCGGACAACAGGGGCTCTTCGGGCCGTGA

Domains

Predicted by InterProScan.

RuvB AAA lid domain (AAA_lid_4)

(192-265)

RuvB C-terminal winged helix domain (WHD_RuvB)

(267-336)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(31-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

54.381

92.201

0.501
  ruvB Streptococcus pneumoniae TIGR4

52.778

90.251

0.476
  ruvB Streptococcus pneumoniae R6

52.778

90.251

0.476
  ruvB Streptococcus pneumoniae D39

52.778

90.251

0.476
  ruvB Synechocystis sp. PCC 6803

53.822

87.465

0.471
  ruvB Helicobacter pylori 26695

50.943

88.579

0.451