Detailed information
Bioinformatically predicted
Overview
| Name | ruvA | Type | Machinery gene |
| Locus tag | LDM86_RS04740 | Genome accession | NZ_AP024962 |
| Coordinates | 992364..992915 (-) | Length | 183 a.a. |
| NCBI ID | WP_223888909.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain #3 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 987364..997915
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LDM86_RS04725 (OHP003_09570) | ruvC | 988228..988710 (-) | 483 | WP_223888906.1 | crossover junction endodeoxyribonuclease RuvC | - |
| LDM86_RS04730 (OHP003_09580) | - | 988841..989566 (+) | 726 | WP_223888907.1 | NYN domain-containing protein | - |
| LDM86_RS04735 (OHP003_09590) | - | 989949..992312 (-) | 2364 | WP_223888908.1 | DUF3519 domain-containing protein | - |
| LDM86_RS04740 (OHP003_09600) | ruvA | 992364..992915 (-) | 552 | WP_223888909.1 | Holliday junction branch migration protein RuvA | Machinery gene |
| LDM86_RS04745 (OHP003_09610) | - | 992940..994784 (-) | 1845 | WP_223888910.1 | hypothetical protein | - |
| LDM86_RS04750 (OHP003_09620) | murJ | 994877..996337 (+) | 1461 | WP_223888911.1 | murein biosynthesis integral membrane protein MurJ | - |
| LDM86_RS04755 (OHP003_09630) | cysS | 996338..997735 (+) | 1398 | WP_096531267.1 | cysteine--tRNA ligase | - |
Sequence
Protein
Download Length: 183 a.a. Molecular weight: 20127.71 Da Isoelectric Point: 8.5032
>NTDB_id=76147 LDM86_RS04740 WP_223888909.1 992364..992915(-) (ruvA) [Helicobacter pylori strain #3]
MIVGLIGVVEKISALEVHIEVQGVVYGVQVSMRTSALLQAGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGV
GGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIGFFIQDEASPARNEVFLALESLGFKSAEINKV
LKTLKPHLSTEAAIKEALQQLHS
MIVGLIGVVEKISALEVHIEVQGVVYGVQVSMRTSALLQAGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGV
GGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIGFFIQDEASPARNEVFLALESLGFKSAEINKV
LKTLKPHLSTEAAIKEALQQLHS
Nucleotide
Download Length: 552 bp
>NTDB_id=76147 LDM86_RS04740 WP_223888909.1 992364..992915(-) (ruvA) [Helicobacter pylori strain #3]
ATGATAGTGGGTTTGATAGGGGTTGTGGAAAAAATTTCTGCTTTAGAAGTGCATATAGAAGTGCAAGGGGTTGTTTATGG
GGTGCAAGTTTCTATGCGAACTTCTGCTTTGCTCCAAGCGGGCCAAAAAGCGCGTTTGAAAATCTTGCAAGTGATTAAAG
AAGATGCGCATCTTTTATACGGGTTTTTAGAAGAGAGCGAAAAAATCCTCTTTGAAAGGCTTTTAAAAATCAATGGGGTA
GGGGGGCGTATCGCTTTAGCCATTCTTTCAAGCTTTTCGCCGAATGAATTTGAAAACATTATCGCCACTAAAGAAGTCAA
AAGACTCCAGCAAGTCCCAGGCATAGGCAAAAAGCTCGCTGATAAGATCATGGTGGATTTGATTGGTTTTTTCATTCAAG
ATGAAGCTAGCCCTGCACGCAATGAAGTCTTTTTAGCCCTAGAGAGTTTGGGCTTTAAAAGCGCTGAAATCAATAAAGTT
TTAAAAACCTTAAAACCCCATCTCAGCACCGAAGCAGCGATTAAAGAAGCCTTACAGCAACTGCACTCTTAA
ATGATAGTGGGTTTGATAGGGGTTGTGGAAAAAATTTCTGCTTTAGAAGTGCATATAGAAGTGCAAGGGGTTGTTTATGG
GGTGCAAGTTTCTATGCGAACTTCTGCTTTGCTCCAAGCGGGCCAAAAAGCGCGTTTGAAAATCTTGCAAGTGATTAAAG
AAGATGCGCATCTTTTATACGGGTTTTTAGAAGAGAGCGAAAAAATCCTCTTTGAAAGGCTTTTAAAAATCAATGGGGTA
GGGGGGCGTATCGCTTTAGCCATTCTTTCAAGCTTTTCGCCGAATGAATTTGAAAACATTATCGCCACTAAAGAAGTCAA
AAGACTCCAGCAAGTCCCAGGCATAGGCAAAAAGCTCGCTGATAAGATCATGGTGGATTTGATTGGTTTTTTCATTCAAG
ATGAAGCTAGCCCTGCACGCAATGAAGTCTTTTTAGCCCTAGAGAGTTTGGGCTTTAAAAGCGCTGAAATCAATAAAGTT
TTAAAAACCTTAAAACCCCATCTCAGCACCGAAGCAGCGATTAAAGAAGCCTTACAGCAACTGCACTCTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvA | Helicobacter pylori 26695 |
94.536 |
100 |
0.945 |
| ruvA | Bacillus subtilis subsp. subtilis str. 168 |
33.333 |
100 |
0.366 |
| ruvA | Streptococcus pneumoniae R6 |
33.846 |
100 |
0.361 |
| ruvA | Streptococcus pneumoniae D39 |
33.846 |
100 |
0.361 |
| ruvA | Streptococcus pneumoniae TIGR4 |
33.846 |
100 |
0.361 |