Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QI555_RS11415 Genome accession   NZ_CP124740
Coordinates   2291673..2292209 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli O157:H7 str. EDL933     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2286673..2297209
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QI555_RS11395 (QI555_11395) soxR 2288402..2288866 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  QI555_RS11400 (QI555_11400) soxS 2288952..2289275 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  QI555_RS11405 (QI555_11405) pdeC 2289278..2290864 (-) 1587 WP_001016522.1 c-di-GMP phosphodiesterase PdeC -
  QI555_RS11410 (QI555_11410) yjcB 2291293..2291574 (+) 282 WP_001295689.1 YjcB family protein -
  QI555_RS11415 (QI555_11415) ssb 2291673..2292209 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  QI555_RS11420 (QI555_11420) uvrA 2292464..2295286 (+) 2823 WP_000357763.1 excinuclease ABC subunit UvrA Machinery gene
  QI555_RS11425 (QI555_11425) yjbR 2295321..2295677 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  QI555_RS11430 (QI555_11430) yjbQ 2295681..2296097 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  QI555_RS11435 (QI555_11435) aphA 2296208..2296921 (-) 714 WP_001226923.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=761322 QI555_RS11415 WP_000168305.1 2291673..2292209(-) (ssb) [Escherichia coli O157:H7 str. EDL933]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=761322 QI555_RS11415 WP_000168305.1 2291673..2292209(-) (ssb) [Escherichia coli O157:H7 str. EDL933]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489