Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   OSV15_RS20180 Genome accession   NZ_CP113257
Coordinates   4163512..4165107 (+) Length   531 a.a.
NCBI ID   WP_267931233.1    Uniprot ID   -
Organism   Stutzerimonas frequens strain TF18     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4158512..4170107
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OSV15_RS20160 (OSV15_20160) pgeF 4160267..4161004 (-) 738 WP_152481767.1 peptidoglycan editing factor PgeF -
  OSV15_RS20165 (OSV15_20165) rluD 4161001..4161975 (-) 975 WP_063541901.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  OSV15_RS20170 (OSV15_20170) - 4162179..4163168 (+) 990 WP_063541899.1 outer membrane protein assembly factor BamD -
  OSV15_RS20175 (OSV15_20175) - 4163289..4163522 (+) 234 WP_110775887.1 PP0621 family protein -
  OSV15_RS20180 (OSV15_20180) pilS 4163512..4165107 (+) 1596 WP_267931233.1 sensor histidine kinase Regulator
  OSV15_RS20185 (OSV15_20185) pilR 4165235..4166572 (+) 1338 WP_267931234.1 sigma-54-dependent transcriptional regulator Regulator
  OSV15_RS20190 (OSV15_20190) - 4166651..4167706 (-) 1056 WP_063541891.1 DUF2333 family protein -
  OSV15_RS20195 (OSV15_20195) - 4167921..4169516 (+) 1596 WP_102838687.1 PleD family two-component system response regulator -

Sequence

Protein


Download         Length: 531 a.a.        Molecular weight: 58881.93 Da        Isoelectric Point: 8.1622

>NTDB_id=761321 OSV15_RS20180 WP_267931233.1 4163512..4165107(+) (pilS) [Stutzerimonas frequens strain TF18]
MGTENLAFLGDQGRRILRLYHLYRLAIGLALVLLISSDLHNDLLQMSNPQLFQYGAWLYLILNIVVAVLVQNPARDLPVL
GLALMDVILLSGLFYFGGGTPSGIGNLLIIAVAIANILLRGRIGFFVAAVAAIGLIYLTFYLSISRPEASSQYVQAAALG
TLCFAAAFLVQGLTRRLQASENLARQRAEDVANLEALNALILQRMRTGIMVLSPQERVLLANQGALQLLGQDESLTGERL
APRCPELLKALQQWRGNPTLRPQNLKATPGGPTLQPSFAALQHGNKLDTLVFLEDISQIAQKAQQLKLASLGRLTASIAH
EIRNPLGAISHAAQLLQESEELDGPDRRLAQIIQDHSRRMNLVIENVLQLSRRRQAEPQLLDLKYWLHRFASEFRQGLTP
QQTVHVETIGSSLQTRMDPNQLTQVLTNLVQNGLRYSGQQHSQAQVWLRLFRDEQSDLPIVEVLDDGPGIAADQLHNVFE
PFFTTESKGTGLGLYISRELCESNQARLDYRERPEGGSCFRIVFAHPRKLS

Nucleotide


Download         Length: 1596 bp        

>NTDB_id=761321 OSV15_RS20180 WP_267931233.1 4163512..4165107(+) (pilS) [Stutzerimonas frequens strain TF18]
GTGGGCACTGAAAACCTCGCTTTTCTCGGCGATCAAGGGCGACGCATCCTCCGCCTGTATCACCTCTATCGCCTGGCCAT
CGGCCTGGCACTGGTACTGCTGATAAGCAGTGACCTGCACAACGACCTGCTGCAGATGAGCAATCCGCAGCTGTTCCAGT
ACGGTGCCTGGCTCTATCTGATCCTGAACATCGTGGTCGCCGTGCTGGTGCAGAACCCTGCGCGTGACCTGCCTGTGCTC
GGCCTGGCACTGATGGACGTGATCCTGCTGTCCGGCCTGTTCTATTTCGGTGGAGGCACGCCGAGTGGAATCGGCAACCT
GCTGATCATTGCCGTCGCCATCGCCAACATTCTGCTGCGCGGGCGCATCGGGTTCTTCGTTGCCGCCGTGGCAGCGATTG
GCCTGATCTACCTGACCTTCTATCTCAGCATCAGCCGGCCTGAAGCCAGCAGTCAGTATGTCCAGGCCGCCGCGCTCGGC
ACCCTCTGTTTCGCTGCCGCGTTTCTCGTGCAAGGCCTCACGCGGCGCCTGCAGGCGAGCGAAAATCTGGCACGCCAGCG
CGCCGAGGACGTCGCCAACCTCGAAGCACTCAACGCGCTTATCCTGCAGCGCATGCGCACCGGCATCATGGTGCTGAGCC
CCCAGGAACGCGTGCTGCTGGCCAACCAGGGCGCGCTGCAGCTACTCGGCCAGGACGAATCGCTGACCGGCGAGCGTCTT
GCCCCGCGCTGCCCGGAGTTGCTCAAAGCCCTGCAACAATGGCGCGGCAATCCCACCCTGCGCCCGCAGAATCTCAAGGC
AACGCCGGGTGGCCCAACGCTCCAGCCGAGCTTCGCCGCCCTGCAACATGGCAACAAGCTCGACACCCTGGTCTTTCTTG
AGGACATCTCGCAGATCGCGCAGAAAGCGCAGCAGCTCAAGCTCGCATCTCTCGGACGACTCACCGCCAGCATTGCCCAC
GAGATACGCAACCCGCTGGGCGCCATCAGCCATGCCGCACAGCTGCTTCAGGAGTCCGAGGAGCTTGACGGCCCGGACCG
CCGCCTGGCGCAGATCATTCAGGACCACTCTCGGCGCATGAACCTGGTCATCGAGAACGTCCTGCAACTCTCGCGACGCC
GACAGGCCGAGCCACAGTTGCTGGACCTCAAGTACTGGCTGCATCGCTTCGCGAGCGAGTTCCGCCAAGGCCTGACCCCA
CAACAGACGGTGCATGTGGAAACGATCGGCAGTTCGCTGCAGACCCGCATGGACCCCAATCAGCTGACCCAGGTGCTGAC
CAACCTGGTGCAGAACGGCCTGCGCTACAGCGGGCAGCAGCATTCGCAGGCGCAGGTCTGGCTGCGACTTTTCCGCGACG
AGCAGAGCGATCTGCCGATCGTCGAGGTGCTCGATGACGGCCCCGGCATTGCTGCCGACCAACTGCACAACGTGTTCGAG
CCGTTCTTTACCACCGAGAGCAAGGGCACCGGCCTGGGGCTTTACATCTCGCGAGAACTTTGCGAGAGCAATCAGGCTCG
ACTGGATTATCGCGAACGGCCCGAAGGCGGTAGCTGCTTCCGCATCGTCTTCGCCCACCCGCGTAAGCTGAGTTGA

Domains

Predicted by InterproScan.

PAS domain (PAS_8)

(202-250)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(418-524)

His Kinase A (phospho-acceptor) domain (HisKA)

(310-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

65.537

100

0.655