Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OSV15_RS04000 Genome accession   NZ_CP113257
Coordinates   831716..832207 (+) Length   163 a.a.
NCBI ID   WP_063544073.1    Uniprot ID   A0AA47E3M5
Organism   Stutzerimonas frequens strain TF18     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 826716..837207
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OSV15_RS03990 (OSV15_03990) uvrA 827218..830055 (-) 2838 WP_102840422.1 excinuclease ABC subunit UvrA -
  OSV15_RS03995 (OSV15_03995) - 830187..831554 (+) 1368 WP_267932154.1 MFS transporter -
  OSV15_RS04000 (OSV15_04000) ssb 831716..832207 (+) 492 WP_063544073.1 single-stranded DNA-binding protein Machinery gene
  OSV15_RS04005 (OSV15_04005) - 832219..833103 (+) 885 WP_267932157.1 sugar nucleotide-binding protein -
  OSV15_RS04010 (OSV15_04010) - 833096..834025 (+) 930 WP_267932159.1 NAD-dependent epimerase/dehydratase family protein -
  OSV15_RS04015 (OSV15_04015) - 834096..834770 (-) 675 WP_267932161.1 OmpW family outer membrane protein -
  OSV15_RS04020 (OSV15_04020) - 834955..835740 (+) 786 WP_267932163.1 DUF3450 domain-containing protein -
  OSV15_RS04025 (OSV15_04025) - 835737..837083 (+) 1347 WP_267932164.1 MotA/TolQ/ExbB proton channel family protein -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 18341.41 Da        Isoelectric Point: 5.9492

>NTDB_id=761303 OSV15_RS04000 WP_063544073.1 831716..832207(+) (ssb) [Stutzerimonas frequens strain TF18]
MARGVNKVILIGNVGGDPETRYMPNGNAVTNITLATTDSWKDKQTGQLQERTEWHRVVLFGKVAEIAGEYLRKGSQCYIE
GRLQTREWEKDGVKRYTTEIVVDMNGTMQLLGGRGGNSDDAPRQPRPQREPQQAPRQQAQPQQPAARQQPAPDYDSFDDD
IPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=761303 OSV15_RS04000 WP_063544073.1 831716..832207(+) (ssb) [Stutzerimonas frequens strain TF18]
ATGGCCAGAGGGGTGAACAAAGTCATCTTGATCGGCAATGTCGGCGGCGACCCGGAAACCCGCTACATGCCCAATGGCAA
TGCGGTGACCAACATCACGCTGGCAACCACCGACAGCTGGAAGGACAAGCAGACCGGTCAGCTGCAAGAGCGTACCGAGT
GGCACCGTGTGGTGCTGTTCGGCAAGGTCGCCGAGATTGCCGGCGAGTACCTGCGCAAGGGCTCGCAGTGCTACATCGAA
GGTCGCCTGCAGACGCGCGAGTGGGAGAAGGATGGCGTCAAGCGCTATACCACCGAGATCGTCGTCGACATGAACGGCAC
CATGCAGTTGCTCGGCGGCCGTGGTGGCAATTCCGACGATGCGCCACGCCAGCCGCGCCCGCAGCGCGAGCCGCAGCAGG
CCCCGCGTCAGCAGGCCCAGCCGCAGCAGCCTGCTGCCCGGCAGCAGCCCGCGCCGGACTATGACAGCTTCGACGACGAC
ATCCCCTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.571

100

0.607
  ssb Neisseria gonorrhoeae MS11

48.295

100

0.521
  ssb Neisseria meningitidis MC58

47.159

100

0.509
  ssb Glaesserella parasuis strain SC1401

45.856

100

0.509