Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ORP33_RS20920 Genome accession   NZ_CP113256
Coordinates   4043713..4044231 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain K1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4038713..4049231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ORP33_RS20890 (ORP33_20450) yyaJ 4039218..4040573 (+) 1356 WP_014481501.1 MFS transporter -
  ORP33_RS20895 (ORP33_20455) maa 4040607..4041161 (-) 555 WP_015250785.1 sugar O-acetyltransferase -
  ORP33_RS20900 (ORP33_20460) yyaH 4041177..4041557 (-) 381 WP_213414713.1 VOC family protein -
  ORP33_RS20905 (ORP33_20465) ccpB 4041613..4042548 (-) 936 WP_213414712.1 LacI family DNA-binding transcriptional regulator -
  ORP33_RS20910 (ORP33_20470) xth 4042607..4043365 (-) 759 WP_032722827.1 exodeoxyribonuclease III -
  ORP33_RS20915 (ORP33_20475) rpsR 4043430..4043669 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  ORP33_RS20920 (ORP33_20480) ssbA 4043713..4044231 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  ORP33_RS20925 (ORP33_20485) rpsF 4044272..4044559 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  ORP33_RS20930 (ORP33_20490) ychF 4044670..4045770 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  ORP33_RS20935 (ORP33_20495) yyaE 4045897..4047900 (-) 2004 WP_213414711.1 molybdopterin-dependent oxidoreductase -
  ORP33_RS20940 (ORP33_20500) yyzM 4047951..4048157 (-) 207 WP_003226838.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=761296 ORP33_RS20920 WP_003219228.1 4043713..4044231(-) (ssbA) [Bacillus subtilis strain K1]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=761296 ORP33_RS20920 WP_003219228.1 4043713..4044231(-) (ssbA) [Bacillus subtilis strain K1]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378