Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   ORP33_RS14090 Genome accession   NZ_CP113256
Coordinates   2707397..2708143 (-) Length   248 a.a.
NCBI ID   WP_213414577.1    Uniprot ID   -
Organism   Bacillus subtilis strain K1     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2702397..2713143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ORP33_RS14065 (ORP33_13735) mreC 2702806..2703678 (-) 873 WP_009967915.1 rod shape-determining protein MreC -
  ORP33_RS14070 (ORP33_13740) mreB 2703709..2704722 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  ORP33_RS14075 (ORP33_13745) radC 2704814..2705509 (-) 696 WP_015251546.1 RadC family protein -
  ORP33_RS14080 (ORP33_13750) maf 2705546..2706115 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  ORP33_RS14085 (ORP33_13755) spoIIB 2706268..2707263 (-) 996 WP_225722069.1 stage II sporulation protein SpoIIB -
  ORP33_RS14090 (ORP33_13760) comC 2707397..2708143 (-) 747 WP_213414577.1 prepilin peptidase Machinery gene
  ORP33_RS14095 (ORP33_13765) folC 2708282..2709574 (-) 1293 WP_163189548.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  ORP33_RS14100 (ORP33_13770) valS 2709634..2712276 (-) 2643 WP_017697542.1 valine--tRNA ligase -
  ORP33_RS14105 (ORP33_13775) - 2712722..2712913 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26441.02 Da        Isoelectric Point: 9.7944

>NTDB_id=761276 ORP33_RS14090 WP_213414577.1 2707397..2708143(-) (comC) [Bacillus subtilis strain K1]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAMAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=761276 ORP33_RS14090 WP_213414577.1 2707397..2708143(-) (comC) [Bacillus subtilis strain K1]
ATGCTATCCATTCTTTTTATCTTTGGGCTGATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCTGCCGCAGGAATACGCTTTGGCACATCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGCTAGGTGCGGCAGCCGGATTTCTATTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCAGTTTTGATAGGTGCATTATATGGAGCGGCAGCTGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTCGCCCCCGCTATGGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

99.194

100

0.992