Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   OOK74_RS07325 Genome accession   NZ_CP113241
Coordinates   1578438..1578749 (-) Length   103 a.a.
NCBI ID   WP_166014709.1    Uniprot ID   -
Organism   Vibrio sp. gvc     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1573438..1583749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OOK74_RS07300 lapB 1573620..1574789 (-) 1170 WP_274721329.1 lipopolysaccharide assembly protein LapB -
  OOK74_RS07305 - 1574800..1575084 (-) 285 WP_274721328.1 lipopolysaccharide assembly protein LapA domain-containing protein -
  OOK74_RS07310 ihfB 1575227..1575505 (-) 279 WP_166014712.1 integration host factor subunit beta -
  OOK74_RS07315 rpsA 1575762..1577432 (-) 1671 WP_166014711.1 30S ribosomal protein S1 -
  OOK74_RS07320 cmk 1577541..1578218 (-) 678 WP_274721327.1 (d)CMP kinase -
  OOK74_RS07325 comEA 1578438..1578749 (-) 312 WP_166014709.1 ComEA family DNA-binding protein Machinery gene
  OOK74_RS07330 ppiD 1578886..1580745 (-) 1860 WP_274721326.1 peptidylprolyl isomerase -
  OOK74_RS07335 - 1580899..1581171 (-) 273 WP_166014707.1 HU family DNA-binding protein -
  OOK74_RS07340 lon 1581346..1583715 (-) 2370 WP_274721325.1 endopeptidase La -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 10901.77 Da        Isoelectric Point: 4.9631

>NTDB_id=761102 OOK74_RS07325 WP_166014709.1 1578438..1578749(-) (comEA) [Vibrio sp. gvc]
MQFKTRMMTALLVLCLPAAPMLTCAQEATSVAPIEEGIVITVNINTASAEELATLLKGVGIKKAQAIVDYRQTNGPFASA
DDLTQVTGIGESIVRQNAARILL

Nucleotide


Download         Length: 312 bp        

>NTDB_id=761102 OOK74_RS07325 WP_166014709.1 1578438..1578749(-) (comEA) [Vibrio sp. gvc]
ATGCAATTCAAAACTAGAATGATGACGGCCTTGCTTGTACTGTGTTTACCTGCGGCTCCGATGTTGACTTGTGCACAAGA
GGCGACATCGGTTGCACCGATCGAAGAAGGGATAGTGATCACGGTAAATATTAATACCGCATCAGCAGAAGAGCTGGCTA
CTTTACTGAAAGGGGTTGGTATTAAGAAAGCACAAGCGATTGTGGATTATCGACAAACCAATGGCCCGTTTGCGAGTGCT
GATGATCTTACCCAAGTGACTGGAATTGGAGAGTCTATCGTGCGCCAAAATGCAGCAAGAATTTTGCTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(41-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae C6706

69.903

100

0.699
  comEA Vibrio cholerae strain A1552

69.903

100

0.699
  comEA Vibrio parahaemolyticus RIMD 2210633

58.333

93.204

0.544
  comEA Vibrio campbellii strain DS40M4

55.67

94.175

0.524