Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   QKA38_RS27780 Genome accession   NZ_CP124669
Coordinates   5978988..5979584 (-) Length   198 a.a.
NCBI ID   WP_003095839.1    Uniprot ID   G3XD30
Organism   Pseudomonas aeruginosa strain 2021CK-01494     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5973988..5984584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QKA38_RS27760 (QKA38_27760) aroK 5975119..5975637 (-) 519 WP_003095833.1 shikimate kinase AroK -
  QKA38_RS27765 (QKA38_27765) pilQ 5975649..5977793 (-) 2145 WP_023098191.1 type 4a pilus secretin PilQ Machinery gene
  QKA38_RS27770 (QKA38_27770) comL/pilP 5977847..5978371 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  QKA38_RS27775 (QKA38_27775) pilO 5978368..5978991 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  QKA38_RS27780 (QKA38_27780) pilN 5978988..5979584 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  QKA38_RS27785 (QKA38_27785) pilM 5979584..5980648 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  QKA38_RS27790 (QKA38_27790) - 5980833..5983304 (+) 2472 WP_023098192.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22213.55 Da        Isoelectric Point: 10.0895

>NTDB_id=761102 QKA38_RS27780 WP_003095839.1 5978988..5979584(-) (pilN) [Pseudomonas aeruginosa strain 2021CK-01494]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=761102 QKA38_RS27780 WP_003095839.1 5978988..5979584(-) (pilN) [Pseudomonas aeruginosa strain 2021CK-01494]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTAGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCTGCGCTGGTATTCCTTGGCGACCAGTACTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGACTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAACTGAAGTCGCGGCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGACGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAAGAACATCGCCATCGCCGGCGCGGCCGAGTCCA
ACAACCGCGTTTCCAATCTCATGCGCAACATGGACGCGTCCGAGTGGCTGACCGCCCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAGGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5EOU

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

88.384

0.369