Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   OOK74_RS04850 Genome accession   NZ_CP113241
Coordinates   1009726..1010313 (+) Length   195 a.a.
NCBI ID   WP_274722028.1    Uniprot ID   -
Organism   Vibrio sp. gvc     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1004726..1015313
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OOK74_RS04835 panP 1005695..1007341 (-) 1647 WP_278183196.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -
  OOK74_RS04840 - 1007496..1008401 (-) 906 WP_274722030.1 lysine exporter LysO family protein -
  OOK74_RS04845 - 1008419..1009339 (-) 921 WP_278183197.1 HDOD domain-containing protein -
  OOK74_RS04850 tfoX 1009726..1010313 (+) 588 WP_274722028.1 TfoX/Sxy family DNA transformation protein Regulator
  OOK74_RS04855 - 1010454..1011002 (-) 549 WP_274722027.1 hypothetical protein -
  OOK74_RS04860 - 1011201..1011698 (-) 498 WP_166013177.1 response regulator -
  OOK74_RS04865 - 1011695..1013641 (-) 1947 WP_278183198.1 ATP-binding protein -
  OOK74_RS04870 - 1013864..1015129 (+) 1266 WP_278183199.1 DUF945 family protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22969.33 Da        Isoelectric Point: 7.2143

>NTDB_id=761096 OOK74_RS04850 WP_274722028.1 1009726..1010313(+) (tfoX) [Vibrio sp. gvc]
MNEQQFLNYITKFGAYQRRSMFGGIGLFQHDAMYVLVSEERIFIRGCEELDPELIDLGCEKYRHVKKQTTATVNYYDITD
LYEQNYPELDSIIERSIQFSVDQREFQRSVASRRLRDLPNMQLTLERMVKKAGIDDVETFIKLGAPAVFNKVRQTYGSDV
DVKLLWKFAGAIESIHWKLLQEPRKRQLLESCQLR

Nucleotide


Download         Length: 588 bp        

>NTDB_id=761096 OOK74_RS04850 WP_274722028.1 1009726..1010313(+) (tfoX) [Vibrio sp. gvc]
ATGAATGAGCAACAGTTTTTAAATTACATAACTAAGTTTGGCGCATATCAAAGACGTTCTATGTTTGGTGGTATCGGGTT
GTTTCAGCACGATGCGATGTACGTGTTGGTTAGTGAAGAGCGTATTTTTATCCGCGGTTGCGAGGAGTTAGACCCTGAGC
TGATTGATTTAGGGTGTGAAAAATATCGTCATGTCAAAAAACAGACTACGGCTACAGTGAATTATTATGATATTACCGAT
CTTTATGAGCAAAATTATCCAGAGCTAGATTCGATTATCGAGCGTTCTATTCAATTTTCGGTGGATCAGCGTGAGTTTCA
ACGTTCAGTCGCTAGTCGTCGTCTACGTGATCTGCCCAATATGCAACTCACCTTAGAGCGCATGGTAAAAAAAGCCGGTA
TCGATGATGTTGAAACCTTTATTAAGTTAGGTGCGCCAGCGGTGTTTAATAAGGTGCGTCAGACTTATGGTAGCGATGTT
GATGTGAAGTTATTGTGGAAGTTTGCCGGTGCGATTGAGAGTATTCATTGGAAACTGCTGCAAGAGCCACGTAAGCGTCA
GTTGCTGGAAAGTTGTCAGCTACGTTGA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(112-190)

TfoX N-terminal domain (TfoX_N)

(9-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

89.744

100

0.897
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

89.744

100

0.897
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

89.744

100

0.897
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

89.744

100

0.897
  tfoX Vibrio cholerae strain A1552

89.744

100

0.897
  tfoX Vibrio campbellii strain DS40M4

65.285

98.974

0.646
  tfoX Vibrio parahaemolyticus RIMD 2210633

64.767

98.974

0.641
  tfoX Aliivibrio fischeri ES114

56.383

96.41

0.544