Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   QKA38_RS21910 Genome accession   NZ_CP124669
Coordinates   4706405..4707463 (-) Length   352 a.a.
NCBI ID   WP_023097925.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain 2021CK-01494     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4701405..4712463
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QKA38_RS21880 (QKA38_21880) pal 4701846..4702352 (-) 507 WP_003111417.1 peptidoglycan-associated lipoprotein Pal -
  QKA38_RS21885 (QKA38_21885) tolB 4702405..4703703 (-) 1299 WP_003086128.1 Tol-Pal system beta propeller repeat protein TolB -
  QKA38_RS21890 (QKA38_21890) tolA 4703700..4704743 (-) 1044 WP_003086127.1 cell envelope integrity protein TolA -
  QKA38_RS21895 (QKA38_21895) tolR 4704746..4705186 (-) 441 WP_003086126.1 protein TolR -
  QKA38_RS21900 (QKA38_21900) tolQ 4705209..4705904 (-) 696 WP_003086125.1 protein TolQ -
  QKA38_RS21905 (QKA38_21905) ybgC 4705906..4706352 (-) 447 WP_003086124.1 tol-pal system-associated acyl-CoA thioesterase -
  QKA38_RS21910 (QKA38_21910) ruvB 4706405..4707463 (-) 1059 WP_023097925.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  QKA38_RS21915 (QKA38_21915) ruvA 4707474..4708079 (-) 606 WP_003086122.1 Holliday junction branch migration protein RuvA -
  QKA38_RS21920 (QKA38_21920) ruvC 4708096..4708620 (-) 525 WP_003112575.1 crossover junction endodeoxyribonuclease RuvC -
  QKA38_RS21925 (QKA38_21925) - 4708705..4709451 (-) 747 WP_003086107.1 YebC/PmpR family DNA-binding transcriptional regulator -
  QKA38_RS21930 (QKA38_21930) aspS 4709518..4711293 (-) 1776 WP_003123218.1 aspartate--tRNA ligase -
  QKA38_RS21935 (QKA38_21935) - 4711733..4712203 (+) 471 WP_003086103.1 Dps family protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 38946.70 Da        Isoelectric Point: 5.1792

>NTDB_id=761074 QKA38_RS21910 WP_023097925.1 4706405..4707463(-) (ruvB) [Pseudomonas aeruginosa strain 2021CK-01494]
MIEPDRLISAVSGRERDEQLDRAIRPLKLADYIGQPSVREQMELFIHAARGRQEALDHTLIFGPPGLGKTTLANIIAQEM
GVSIKSTSGPVLERPGDLAALLTNLEAGDVLFVDEIHRLSPIVEEVLYPAMEDFQLDIMIGEGPAARSIKLDLPPFTLVG
ATTRAGMLTNPLRDRFGIVQRLEFYNVEDLATIVSRSAGILGLEIEPQGAAEIAKRARGTPRIANRLLRRVRDFAEVRGQ
GDITRVIADKALNLLDVDERGFDHLDRRLLLTMIDKFDGGPVGIDNLAAALSEERHTIEDVLEPYLIQQGYIMRTPRGRV
LTRHAYLHFGLNIPKRLGPGVTTDLFTSEDGN

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=761074 QKA38_RS21910 WP_023097925.1 4706405..4707463(-) (ruvB) [Pseudomonas aeruginosa strain 2021CK-01494]
ATGATCGAGCCTGATCGCCTCATATCCGCCGTTTCCGGTCGCGAACGCGATGAGCAGTTGGACCGCGCCATTCGCCCGCT
GAAGCTGGCCGACTACATCGGCCAGCCCAGCGTGCGCGAGCAGATGGAACTGTTCATCCATGCCGCGCGCGGCCGCCAGG
AGGCGCTCGACCATACGCTGATCTTCGGTCCGCCGGGGCTGGGCAAGACGACCCTGGCGAATATCATCGCCCAGGAAATG
GGCGTTTCCATCAAGAGTACTTCCGGGCCGGTGCTCGAGCGTCCCGGCGATCTCGCCGCGTTGCTGACCAACCTGGAGGC
CGGCGACGTCCTGTTCGTCGACGAGATCCACCGTCTTTCGCCCATCGTCGAAGAAGTGCTGTATCCGGCCATGGAAGATT
TCCAGTTGGACATCATGATCGGCGAAGGGCCCGCGGCCCGCTCCATCAAGCTGGACCTGCCGCCGTTCACCCTGGTCGGC
GCGACCACTCGTGCCGGCATGCTGACCAATCCACTGCGCGATCGCTTCGGTATCGTCCAGCGCCTGGAGTTCTACAACGT
CGAGGACCTGGCGACCATCGTCAGTCGGTCGGCCGGCATTCTCGGCCTGGAGATCGAGCCGCAGGGCGCGGCGGAAATCG
CCAAGCGCGCCCGCGGTACGCCGCGAATCGCCAATCGCCTGCTGCGCCGGGTACGCGACTTCGCCGAGGTCCGGGGGCAG
GGCGACATTACCCGGGTGATCGCCGACAAGGCATTGAACCTGCTCGATGTCGACGAGCGTGGCTTCGACCACCTCGACCG
TCGTCTGTTGCTGACCATGATCGACAAGTTCGATGGCGGGCCTGTAGGAATCGACAACTTGGCTGCGGCGTTGAGCGAGG
AGCGGCACACGATCGAAGATGTACTGGAGCCCTATCTGATCCAGCAGGGCTACATCATGCGGACACCGCGGGGGCGCGTG
CTAACACGCCATGCGTACCTGCACTTTGGCCTGAATATTCCGAAAAGGTTGGGGCCGGGGGTGACGACGGATCTGTTCAC
GTCTGAAGATGGTAATTAA

Domains

Predicted by InterProScan.

RuvB AAA lid domain (AAA_lid_4)

(185-258)

RuvB C-terminal winged helix domain (WHD_RuvB)

(259-329)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(24-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

60.725

94.034

0.571
  ruvB Streptococcus pneumoniae TIGR4

59.062

90.909

0.537
  ruvB Streptococcus pneumoniae R6

58.75

90.909

0.534
  ruvB Streptococcus pneumoniae D39

58.75

90.909

0.534
  ruvB Synechocystis sp. PCC 6803

57.143

91.477

0.523
  ruvB Helicobacter pylori 26695

55.449

88.636

0.491