Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   OSZ57_RS05875 Genome accession   NZ_CP113231
Coordinates   1193528..1193974 (-) Length   148 a.a.
NCBI ID   WP_001796473.1    Uniprot ID   -
Organism   Staphylococcus aureus strain BIAI 158     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1188528..1198974
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OSZ57_RS05845 (OSZ57_05845) gcvPA 1189454..1190800 (-) 1347 WP_000019698.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  OSZ57_RS05850 (OSZ57_05850) gcvT 1190820..1191911 (-) 1092 WP_000093344.1 glycine cleavage system aminomethyltransferase GcvT -
  OSZ57_RS05855 (OSZ57_05855) - 1192070..1192594 (-) 525 WP_001015120.1 shikimate kinase -
  OSZ57_RS05860 (OSZ57_05860) - 1192584..1192730 (-) 147 WP_001789879.1 hypothetical protein -
  OSZ57_RS05865 (OSZ57_05865) comGF 1192827..1193324 (-) 498 WP_001796472.1 competence type IV pilus minor pilin ComGF Machinery gene
  OSZ57_RS05870 (OSZ57_05870) comGE 1193242..1193541 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  OSZ57_RS05875 (OSZ57_05875) comGD 1193528..1193974 (-) 447 WP_001796473.1 competence type IV pilus minor pilin ComGD Machinery gene
  OSZ57_RS05880 (OSZ57_05880) comGC 1193952..1194263 (-) 312 WP_000472255.1 competence type IV pilus major pilin ComGC Machinery gene
  OSZ57_RS05885 (OSZ57_05885) comGB 1194277..1195347 (-) 1071 WP_000776409.1 competence type IV pilus assembly protein ComGB Machinery gene
  OSZ57_RS05890 (OSZ57_05890) comGA 1195319..1196293 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  OSZ57_RS05895 (OSZ57_05895) - 1196345..1196968 (-) 624 WP_001223009.1 MBL fold metallo-hydrolase -
  OSZ57_RS05900 (OSZ57_05900) - 1196965..1197294 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  OSZ57_RS05905 (OSZ57_05905) - 1197294..1198280 (-) 987 WP_000161307.1 ROK family glucokinase -
  OSZ57_RS05910 (OSZ57_05910) - 1198277..1198480 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17131.31 Da        Isoelectric Point: 10.3312

>NTDB_id=761001 OSZ57_RS05875 WP_001796473.1 1193528..1193974(-) (comGD) [Staphylococcus aureus strain BIAI 158]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISLITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=761001 OSZ57_RS05875 WP_001796473.1 1193528..1193974(-) (comGD) [Staphylococcus aureus strain BIAI 158]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTTTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTCTTA
TTACTGAATTGAATTATATTAAATCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
CATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

99.324

100

0.993
  comGD Staphylococcus aureus N315

99.324

100

0.993