Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   QJ951_RS21905 Genome accession   NZ_CP124668
Coordinates   4704882..4705940 (-) Length   352 a.a.
NCBI ID   WP_023097925.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain 2021CK-01445     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4699882..4710940
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJ951_RS21875 (QJ951_21875) pal 4700323..4700829 (-) 507 WP_003111417.1 peptidoglycan-associated lipoprotein Pal -
  QJ951_RS21880 (QJ951_21880) tolB 4700882..4702180 (-) 1299 WP_003086128.1 Tol-Pal system beta propeller repeat protein TolB -
  QJ951_RS21885 (QJ951_21885) tolA 4702177..4703220 (-) 1044 WP_003086127.1 cell envelope integrity protein TolA -
  QJ951_RS21890 (QJ951_21890) tolR 4703223..4703663 (-) 441 WP_003086126.1 protein TolR -
  QJ951_RS21895 (QJ951_21895) tolQ 4703686..4704381 (-) 696 WP_003086125.1 protein TolQ -
  QJ951_RS21900 (QJ951_21900) ybgC 4704383..4704829 (-) 447 WP_003086124.1 tol-pal system-associated acyl-CoA thioesterase -
  QJ951_RS21905 (QJ951_21905) ruvB 4704882..4705940 (-) 1059 WP_023097925.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  QJ951_RS21910 (QJ951_21910) ruvA 4705951..4706556 (-) 606 WP_003086122.1 Holliday junction branch migration protein RuvA -
  QJ951_RS21915 (QJ951_21915) ruvC 4706573..4707097 (-) 525 WP_003112575.1 crossover junction endodeoxyribonuclease RuvC -
  QJ951_RS21920 (QJ951_21920) - 4707182..4707928 (-) 747 WP_003086107.1 YebC/PmpR family DNA-binding transcriptional regulator -
  QJ951_RS21925 (QJ951_21925) aspS 4707995..4709770 (-) 1776 WP_003123218.1 aspartate--tRNA ligase -
  QJ951_RS21930 (QJ951_21930) - 4710210..4710680 (+) 471 WP_003086103.1 Dps family protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 38946.70 Da        Isoelectric Point: 5.1792

>NTDB_id=760972 QJ951_RS21905 WP_023097925.1 4704882..4705940(-) (ruvB) [Pseudomonas aeruginosa strain 2021CK-01445]
MIEPDRLISAVSGRERDEQLDRAIRPLKLADYIGQPSVREQMELFIHAARGRQEALDHTLIFGPPGLGKTTLANIIAQEM
GVSIKSTSGPVLERPGDLAALLTNLEAGDVLFVDEIHRLSPIVEEVLYPAMEDFQLDIMIGEGPAARSIKLDLPPFTLVG
ATTRAGMLTNPLRDRFGIVQRLEFYNVEDLATIVSRSAGILGLEIEPQGAAEIAKRARGTPRIANRLLRRVRDFAEVRGQ
GDITRVIADKALNLLDVDERGFDHLDRRLLLTMIDKFDGGPVGIDNLAAALSEERHTIEDVLEPYLIQQGYIMRTPRGRV
LTRHAYLHFGLNIPKRLGPGVTTDLFTSEDGN

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=760972 QJ951_RS21905 WP_023097925.1 4704882..4705940(-) (ruvB) [Pseudomonas aeruginosa strain 2021CK-01445]
ATGATCGAGCCTGATCGCCTCATATCCGCCGTTTCCGGTCGCGAACGCGATGAGCAGTTGGACCGCGCCATTCGCCCGCT
GAAGCTGGCCGACTACATCGGCCAGCCCAGCGTGCGCGAGCAGATGGAACTGTTCATCCATGCCGCGCGCGGCCGCCAGG
AGGCGCTCGACCATACGCTGATCTTCGGTCCGCCGGGGCTGGGCAAGACGACCCTGGCGAATATCATCGCCCAGGAAATG
GGCGTTTCCATCAAGAGTACTTCCGGGCCGGTGCTCGAGCGTCCCGGCGATCTCGCCGCGTTGCTGACCAACCTGGAGGC
CGGCGACGTCCTGTTCGTCGACGAGATCCACCGTCTTTCGCCCATCGTCGAAGAAGTGCTGTATCCGGCCATGGAAGATT
TCCAGTTGGACATCATGATCGGCGAAGGGCCCGCGGCCCGCTCCATCAAGCTGGACCTGCCGCCGTTCACCCTGGTCGGC
GCGACCACTCGTGCCGGCATGCTGACCAATCCACTGCGCGATCGCTTCGGTATCGTCCAGCGCCTGGAGTTCTACAACGT
CGAGGACCTGGCGACCATCGTCAGTCGGTCGGCCGGCATTCTCGGCCTGGAGATCGAGCCGCAGGGCGCGGCGGAAATCG
CCAAGCGCGCCCGCGGTACGCCGCGAATCGCCAATCGCCTGCTGCGCCGGGTACGCGACTTCGCCGAGGTCCGGGGGCAG
GGCGACATTACCCGGGTGATCGCCGACAAGGCATTGAACCTGCTCGATGTCGACGAGCGTGGCTTCGACCACCTCGACCG
TCGTCTGTTGCTGACCATGATCGACAAGTTCGATGGCGGGCCTGTAGGAATCGACAACTTGGCTGCGGCGTTGAGCGAGG
AGCGGCACACGATCGAAGATGTACTGGAGCCCTATCTGATCCAGCAGGGCTACATCATGCGGACACCGCGGGGGCGCGTG
CTAACACGCCATGCGTACCTGCACTTTGGCCTGAATATTCCGAAAAGGTTGGGGCCGGGGGTGACGACGGATCTGTTCAC
GTCTGAAGATGGTAATTAA

Domains

Predicted by InterProScan.

RuvB AAA lid domain (AAA_lid_4)

(185-258)

RuvB C-terminal winged helix domain (WHD_RuvB)

(259-329)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(24-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

60.725

94.034

0.571
  ruvB Streptococcus pneumoniae TIGR4

59.062

90.909

0.537
  ruvB Streptococcus pneumoniae R6

58.75

90.909

0.534
  ruvB Streptococcus pneumoniae D39

58.75

90.909

0.534
  ruvB Synechocystis sp. PCC 6803

57.143

91.477

0.523
  ruvB Helicobacter pylori 26695

55.449

88.636

0.491