Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   LDN16_RS07420 Genome accession   NZ_AP024961
Coordinates   1655226..1656236 (-) Length   336 a.a.
NCBI ID   WP_025862355.1    Uniprot ID   Q5ZV64
Organism   Legionella pneumophila strain 80-045     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1650226..1661236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDN16_RS07390 (LEG80045_14330) - 1650565..1651398 (-) 834 WP_027265268.1 S1/P1 nuclease -
  LDN16_RS07395 (LEG80045_14340) tolB 1651401..1652660 (-) 1260 WP_011215502.1 Tol-Pal system beta propeller repeat protein TolB -
  LDN16_RS07400 (LEG80045_14350) tolA 1652666..1653664 (-) 999 WP_011215501.1 cell envelope integrity protein TolA -
  LDN16_RS07405 (LEG80045_14360) tolR 1653661..1654116 (-) 456 WP_027265269.1 protein TolR -
  LDN16_RS07410 (LEG80045_14370) tolQ 1654125..1654802 (-) 678 WP_011946571.1 protein TolQ -
  LDN16_RS07415 (LEG80045_14380) ybgC 1654827..1655222 (-) 396 WP_010947304.1 tol-pal system-associated acyl-CoA thioesterase -
  LDN16_RS07420 (LEG80045_14390) ruvB 1655226..1656236 (-) 1011 WP_025862355.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  LDN16_RS07425 (LEG80045_14400) - 1656383..1656946 (-) 564 WP_027265270.1 sigma-70 family RNA polymerase sigma factor -
  LDN16_RS07430 (LEG80045_14410) - 1657040..1657489 (-) 450 WP_050566919.1 lpg1578 family Dot/Icm T4SS effector -
  LDN16_RS07435 (LEG80045_14420) - 1657431..1657670 (-) 240 WP_027265272.1 succinate dehydrogenase assembly factor 2 -
  LDN16_RS07440 (LEG80045_14430) - 1657796..1658785 (+) 990 WP_027265273.1 folate-binding protein YgfZ -
  LDN16_RS07445 (LEG80045_14440) - 1658816..1659364 (-) 549 WP_027265274.1 cytochrome b -

Sequence

Protein


Download         Length: 336 a.a.        Molecular weight: 37104.63 Da        Isoelectric Point: 5.2639

>NTDB_id=76084 LDN16_RS07420 WP_025862355.1 1655226..1656236(-) (ruvB) [Legionella pneumophila strain 80-045]
MLESDRLISSQSIVSEDAMDRAIRPLSLSEYVGQDSVSSQMQIFINAARKRNDPLDHVLIFGPPGLGKTTLANIIAHEMG
VNIRQTSGPVIERAGDIAAILTNLQQNDVLFIDEIHRLSPVIEEILYPAMEDYKLDIMIGEGPAARSIKLELPPFTLIGA
TTRAGLLTSPLRDRFGIVQRLEYYSVDSLTQIVARSAHLLGVPTKPEGAREIALRSRGTPRIANRLLRRVRDYSEVKGNG
IITVDMAQQALEMLEVDQHGFDLMDRKLLLAVIEHFNGGPVGIDSIAAAIGEEKGTIEDVLEPFLIQQGFLMRTPRGRIA
TSKAYQHFGFSAIEQE

Nucleotide


Download         Length: 1011 bp        

>NTDB_id=76084 LDN16_RS07420 WP_025862355.1 1655226..1656236(-) (ruvB) [Legionella pneumophila strain 80-045]
ATGCTCGAAAGTGATCGCCTAATAAGTAGTCAAAGTATTGTCTCGGAAGACGCAATGGATAGAGCCATCAGGCCGCTTAG
CTTGAGCGAGTATGTAGGGCAAGATTCTGTTAGCTCACAGATGCAGATATTTATCAATGCGGCAAGAAAGAGAAACGATC
CTTTGGATCATGTTCTTATTTTTGGCCCGCCTGGCCTTGGTAAAACTACCCTTGCAAATATCATAGCTCACGAAATGGGA
GTGAATATCCGACAAACTTCTGGGCCAGTGATCGAGCGTGCTGGAGATATTGCTGCTATATTGACGAATCTACAACAAAA
TGATGTACTATTTATTGATGAAATTCATAGATTAAGTCCTGTTATAGAAGAAATTCTTTATCCAGCCATGGAAGATTATA
AGTTGGATATCATGATAGGCGAGGGGCCAGCAGCACGATCTATTAAATTAGAGTTACCTCCCTTTACATTAATTGGAGCA
ACGACGAGAGCAGGGTTGCTTACCTCGCCATTAAGGGATAGATTTGGTATAGTGCAACGTTTGGAATATTATTCTGTTGA
TTCGCTTACCCAGATTGTGGCACGCTCCGCGCATTTGCTTGGTGTCCCTACAAAACCCGAAGGAGCCAGAGAAATTGCAT
TACGCTCCAGAGGAACACCACGAATAGCCAATCGCCTGTTAAGAAGAGTCAGGGATTATTCTGAAGTGAAAGGAAATGGC
ATCATTACTGTTGATATGGCCCAACAAGCATTGGAAATGCTTGAAGTGGATCAGCACGGGTTTGATTTAATGGATAGAAA
ATTATTGTTAGCGGTAATAGAACACTTCAATGGTGGTCCAGTAGGCATAGATAGTATTGCAGCCGCTATTGGCGAAGAAA
AAGGAACTATAGAAGATGTTTTGGAGCCATTTTTAATACAACAAGGCTTTCTAATGCGCACTCCTCGCGGTAGAATAGCC
ACTTCGAAAGCTTATCAGCATTTTGGCTTTAGTGCGATCGAACAGGAATAA

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(259-328)

RuvB AAA lid domain (AAA_lid_4)

(184-257)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(23-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5ZV64

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

60.366

97.619

0.589
  ruvB Streptococcus pneumoniae TIGR4

56.667

98.214

0.557
  ruvB Streptococcus pneumoniae R6

56.667

98.214

0.557
  ruvB Streptococcus pneumoniae D39

56.667

98.214

0.557
  ruvB Helicobacter pylori 26695

52.795

95.833

0.506
  ruvB Synechocystis sp. PCC 6803

53.871

92.262

0.497

Multiple sequence alignment