Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MKJ05_RS15330 Genome accession   NZ_CP113163
Coordinates   3209736..3210260 (-) Length   174 a.a.
NCBI ID   WP_003826621.1    Uniprot ID   A0A5B0T4S2
Organism   Citrobacter braakii strain LBA3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3204736..3215260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKJ05_RS15310 (MKJ05_15310) soxR 3206379..3206837 (-) 459 WP_114683851.1 redox-sensitive transcriptional activator SoxR -
  MKJ05_RS15315 (MKJ05_15315) soxS 3206924..3207247 (+) 324 WP_114683850.1 superoxide response transcriptional regulator SoxS -
  MKJ05_RS15320 (MKJ05_15320) - 3207250..3208836 (-) 1587 WP_267581832.1 EAL domain-containing protein -
  MKJ05_RS15325 (MKJ05_15325) - 3209388..3209669 (+) 282 WP_016155360.1 YjcB family protein -
  MKJ05_RS15330 (MKJ05_15330) ssb 3209736..3210260 (-) 525 WP_003826621.1 single-stranded DNA-binding protein SSB1 Machinery gene
  MKJ05_RS15335 (MKJ05_15335) uvrA 3210512..3213334 (+) 2823 WP_016155358.1 excinuclease ABC subunit UvrA -
  MKJ05_RS15340 (MKJ05_15340) - 3213430..3213786 (-) 357 WP_199143471.1 MmcQ/YjbR family DNA-binding protein -
  MKJ05_RS15345 (MKJ05_15345) aphA 3213914..3214627 (-) 714 WP_114683847.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18621.66 Da        Isoelectric Point: 5.2456

>NTDB_id=760690 MKJ05_RS15330 WP_003826621.1 3209736..3210260(-) (ssb) [Citrobacter braakii strain LBA3]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQSAPAAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=760690 MKJ05_RS15330 WP_003826621.1 3209736..3210260(-) (ssb) [Citrobacter braakii strain LBA3]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAAATGAAAGAGCAGACTG
AATGGCACCGTGTTGTGCTGTTCGGCAAACTGGCGGAAGTTGCCAGTGAATATCTGCGTAAAGGTTCCCAGGTCTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGCGTAGAAAAGTACACCACTGAAGTTGTGGTTAACGTTGG
CGGCACCATGCAAATGCTGGGCGGTCGTCAGGGTGGTGGTGCTCCGGCAGGTGGCGGCCAGCAGCAGGGGGGTTGGGGTC
AGCCTCAGCAGCCGCAAGGTGGCAATCAGTTCAGCGGTGGCGCGCAGTCTCGCCCGCAGCAGTCAGCTCCGGCAGCGCCA
TCTAATGAGCCACCGATGGATTTCGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B0T4S2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.889

100

0.764
  ssb Glaesserella parasuis strain SC1401

56.831

100

0.598
  ssb Neisseria meningitidis MC58

48.603

100

0.5
  ssb Neisseria gonorrhoeae MS11

48.603

100

0.5