Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QJ956_RS03695 Genome accession   NZ_CP124665
Coordinates   762741..763238 (+) Length   165 a.a.
NCBI ID   WP_003114685.1    Uniprot ID   A0A0H2ZGD4
Organism   Pseudomonas aeruginosa strain 2021CK-01229     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 757741..768238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJ956_RS03680 (QJ956_03680) bfr 757749..758213 (+) 465 WP_003093668.1 bacterioferritin -
  QJ956_RS03685 (QJ956_03685) uvrA 758285..761122 (-) 2838 WP_003093663.1 excinuclease ABC subunit UvrA Machinery gene
  QJ956_RS03690 (QJ956_03690) - 761336..762724 (+) 1389 WP_031686858.1 MFS transporter -
  QJ956_RS03695 (QJ956_03695) ssb 762741..763238 (+) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  QJ956_RS03700 (QJ956_03700) pchA 763327..764757 (-) 1431 WP_031686860.1 isochorismate synthase PchA -
  QJ956_RS03705 (QJ956_03705) pchB 764754..765059 (-) 306 WP_003106950.1 isochorismate lyase PchB -
  QJ956_RS03710 (QJ956_03710) pchC 765059..765814 (-) 756 WP_015502297.1 pyochelin biosynthesis editing thioesterase PchC -
  QJ956_RS03715 (QJ956_03715) pchD 765811..767454 (-) 1644 WP_031686861.1 pyochelin biosynthesis salicyl-AMP ligase PchD -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18557.46 Da        Isoelectric Point: 5.2781

>NTDB_id=760635 QJ956_RS03695 WP_003114685.1 762741..763238(+) (ssb) [Pseudomonas aeruginosa strain 2021CK-01229]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=760635 QJ956_RS03695 WP_003114685.1 762741..763238(+) (ssb) [Pseudomonas aeruginosa strain 2021CK-01229]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACTCGCAAGTGGCAGGGCCAGGACGGTCAGGATCGCTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGTTGCTCGGCGGCCGCCCCTCCGGCGACGACTCGCAGCGCGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAGCAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGCCGCAGCCGGCCCAGGATTACGACAGCTTCGAC
GACGACATTCCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZGD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.636
  ssb Glaesserella parasuis strain SC1401

52.486

100

0.576
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.521
  ssb Neisseria meningitidis MC58

47.486

100

0.515