Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilM   Type   Machinery gene
Locus tag   P7I91_RS30690 Genome accession   NZ_CP124662
Coordinates   6496077..6497141 (-) Length   354 a.a.
NCBI ID   WP_003110888.1    Uniprot ID   A0A0H2ZID6
Organism   Pseudomonas aeruginosa strain 2021CK-01633     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 6491077..6502141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P7I91_RS30665 (P7I91_30665) aroK 6491612..6492130 (-) 519 WP_003095833.1 shikimate kinase AroK -
  P7I91_RS30670 (P7I91_30670) pilQ 6492142..6494286 (-) 2145 WP_023087871.1 type 4a pilus secretin PilQ Machinery gene
  P7I91_RS30675 (P7I91_30675) comL/pilP 6494340..6494864 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  P7I91_RS30680 (P7I91_30680) pilO 6494861..6495484 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  P7I91_RS30685 (P7I91_30685) pilN 6495481..6496077 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  P7I91_RS30690 (P7I91_30690) pilM 6496077..6497141 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  P7I91_RS30695 (P7I91_30695) - 6497326..6499797 (+) 2472 WP_003125627.1 penicillin-binding protein 1A -
  P7I91_RS30700 (P7I91_30700) - 6499893..6501161 (-) 1269 WP_003095842.1 malic enzyme -

Sequence


Protein


Download         Length: 354 a.a.        Molecular weight: 37983.48 Da        Isoelectric Point: 4.5405

>NTDB_id=760407 P7I91_RS30690 WP_003110888.1 6496077..6497141(-) (pilM) [Pseudomonas aeruginosa strain 2021CK-01633]
MLGLIKKKANTLLGIDISSTSVKLLELSRSGGRYKVEAYAVEPLPPNAVVEKNIVELEGVGQALSRVLVKAKTNLKSAVV
AVAGSAVITKTIEMEAGLSEDELENQLKIEADQYIPYPLEEVAIDFEVQGLSARNPERVDVLLAACRKENVEVREAALAL
AGLTAKVVDVEAYALERSYALLSSQLGADTDQLTVAVVDIGATMTTLSVLHNGRTIYTREQLFGGRQLTEEIQRRYGLSV
EEAGLAKKQGGLPDDYDSEVLRPFKDAVVQQVSRSLQFFFAAGQFNDVDYIVLAGGTASIQDLDRLIQQKIGTPTLVANP
FADMALNGKVNAGALASDAPALMIACGLALRSFD

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=760407 P7I91_RS30690 WP_003110888.1 6496077..6497141(-) (pilM) [Pseudomonas aeruginosa strain 2021CK-01633]
GTGCTAGGGCTCATAAAGAAGAAAGCGAACACCTTGCTGGGGATCGACATCAGCTCGACCTCGGTAAAGCTCCTTGAGTT
GAGCCGCTCCGGAGGCCGCTACAAAGTGGAGGCCTATGCCGTCGAGCCGCTTCCGCCGAATGCAGTCGTGGAAAAGAACA
TCGTCGAGCTGGAAGGGGTCGGCCAGGCGTTGTCGCGGGTGCTGGTCAAGGCGAAAACCAACCTGAAGTCGGCCGTGGTC
GCCGTCGCCGGTTCGGCGGTGATCACCAAGACCATCGAGATGGAGGCCGGGCTTTCCGAGGATGAACTGGAAAACCAGCT
GAAGATCGAGGCCGACCAGTACATCCCCTATCCGCTGGAGGAAGTCGCCATCGACTTCGAGGTCCAGGGGCTCTCCGCGC
GCAATCCCGAGCGCGTGGACGTACTCCTGGCCGCCTGTCGGAAAGAGAACGTCGAGGTTCGCGAAGCGGCCCTGGCGCTG
GCCGGCCTGACCGCCAAGGTGGTCGACGTCGAGGCCTACGCGCTGGAGCGCTCCTATGCGCTGCTGAGCAGCCAGCTGGG
TGCCGACACCGACCAGTTGACCGTGGCGGTAGTGGACATCGGCGCGACCATGACCACCCTGAGCGTCCTGCACAACGGAC
GCACCATCTATACCCGCGAACAGCTGTTCGGCGGTCGCCAGCTCACCGAGGAGATCCAGCGGCGTTACGGACTCTCGGTG
GAGGAAGCCGGTCTCGCCAAGAAGCAGGGCGGTCTTCCGGATGACTACGACAGCGAGGTTCTGCGTCCGTTCAAGGACGC
CGTGGTGCAGCAGGTTTCCCGCTCGCTGCAGTTCTTCTTCGCCGCCGGACAGTTCAACGACGTCGACTACATCGTCCTGG
CGGGCGGTACGGCGTCTATCCAGGATCTCGATCGGTTGATCCAGCAGAAGATCGGCACCCCGACCCTGGTCGCCAACCCG
TTCGCCGACATGGCGCTGAACGGCAAGGTGAATGCCGGCGCCCTGGCCAGCGACGCTCCGGCGTTGATGATCGCCTGCGG
CCTGGCGTTGAGGAGTTTCGACTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A0H2ZID6

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

55.899

100

0.562

  comM Acinetobacter nosocomialis M2

55.899

100

0.562

  comM/pilM Acinetobacter baylyi ADP1

51.977

100

0.52

  pilM Legionella pneumophila strain ERS1305867

46.61

100

0.466