Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   OVY33_RS06650 Genome accession   NZ_CP113107
Coordinates   1347289..1348917 (-) Length   542 a.a.
NCBI ID   WP_103357136.1    Uniprot ID   A0A2K3YX49
Organism   Staphylococcus rostri strain PJFA-333     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1342289..1353917
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OVY33_RS06610 - 1342967..1343269 (-) 303 WP_103358420.1 transposase -
  OVY33_RS06615 - 1343308..1343688 (-) 381 WP_103358421.1 hypothetical protein -
  OVY33_RS06620 - 1343940..1344278 (-) 339 WP_240624097.1 hypothetical protein -
  OVY33_RS06625 - 1344268..1344720 (-) 453 WP_103357131.1 hypothetical protein -
  OVY33_RS06630 - 1345159..1345662 (-) 504 WP_103357132.1 DUF1643 domain-containing protein -
  OVY33_RS06635 - 1345677..1345988 (-) 312 WP_103357133.1 DUF960 family protein -
  OVY33_RS06640 - 1346084..1346422 (-) 339 WP_103357134.1 SAUGI family uracil-DNA glycosylase inhibitor -
  OVY33_RS06645 - 1346966..1347253 (+) 288 WP_103357135.1 hypothetical protein -
  OVY33_RS06650 ccrB 1347289..1348917 (-) 1629 WP_103357136.1 cassette chromosome recombinase CcrB Machinery gene
  OVY33_RS06655 ccrA 1348937..1350286 (-) 1350 WP_103357137.1 cassette chromosome recombinase CcrA Machinery gene
  OVY33_RS06660 cch1 1350786..1352570 (-) 1785 WP_103357139.1 cassette chromosome replicative helicase -
  OVY33_RS06665 ssb 1352570..1352863 (-) 294 WP_031863540.1 cassette chromosome ssDNA-binding protein -

Sequence

Protein


Download         Length: 542 a.a.        Molecular weight: 62617.86 Da        Isoelectric Point: 9.8430

>NTDB_id=760294 OVY33_RS06650 WP_103357136.1 1347289..1348917(-) (ccrB) [Staphylococcus rostri strain PJFA-333]
MEKLKQKRVGIYVRVSTEMQSSEGYSITGQINQIEEYCQFNNFKVVDVYADRGISGKSMNRPELQRMLKDANEGHIDCVM
VYKINRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVTTSSGKLMLQVLASFAEFERNNIVDNIFMGQTIRAKEGYYQGN
LPLGYEKIPDSKHELMINQHEANIVKYIFEAYAKGHGYRKIANALNHKGYVTKKGKPFSVGSITYILSNPFYIGQIQFAK
YKDWNEKRRKGLNDKPVIAQGKHSPIISQDLWDKVQMRKKQIKEKPQVHGKGTNLLTGIIRCPQCGAAMAASNTTNTLKD
GTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQILEIVKSDKVIKQVVERVNQENRVDVAALNHDIAYKQQQFD
EINTKLKNLVQTIEDNPDLTSALKPTIHQYETQLNDITNQMNQLKQQQNQEKPSYDTKQIAALLQRIFQNIESMDKSQLK
ALYLTVIDRIDIRKDENHKKQFYVTLKLNNEIIKQLFNNKQLDEVHLSTSFLFLPQTLYLKI

Nucleotide


Download         Length: 1629 bp        

>NTDB_id=760294 OVY33_RS06650 WP_103357136.1 1347289..1348917(-) (ccrB) [Staphylococcus rostri strain PJFA-333]
ATGGAAAAACTTAAACAAAAGCGTGTGGGAATTTATGTACGCGTATCGACTGAGATGCAGAGCTCAGAAGGCTACTCGAT
AACAGGCCAGATCAATCAGATTGAAGAATACTGTCAATTTAATAACTTCAAAGTGGTAGATGTATACGCAGATCGTGGTA
TTTCCGGAAAATCTATGAACCGCCCTGAGCTCCAACGTATGTTGAAGGATGCGAATGAAGGTCATATCGATTGTGTCATG
GTGTACAAAATAAACCGACTAGCACGTAATACATCAGACTTACTCAAAATTGTCGAAGATTTGCATAAACAAAACGTCGA
ATTTTTCAGTTTGTCTGAGCGTATGGAAGTCACGACTTCTTCTGGTAAACTCATGCTGCAGGTGCTTGCGAGCTTCGCAG
AATTTGAACGTAATAATATTGTAGACAATATATTTATGGGCCAGACAATTAGAGCGAAAGAAGGGTATTATCAAGGCAAT
TTGCCGTTAGGTTATGAAAAAATACCCGATAGTAAACATGAACTGATGATTAATCAACATGAAGCCAATATTGTGAAATA
TATATTTGAAGCTTACGCTAAAGGTCATGGTTACCGTAAAATTGCTAATGCGTTGAATCATAAAGGTTATGTCACTAAAA
AAGGCAAACCCTTTAGTGTGGGTTCTATAACCTATATCCTATCTAACCCCTTCTACATTGGACAAATTCAGTTTGCGAAA
TACAAAGACTGGAATGAAAAGCGTCGTAAGGGGCTAAACGATAAACCTGTCATCGCTCAGGGAAAGCATTCTCCTATTAT
AAGCCAAGATTTGTGGGACAAAGTCCAAATGCGTAAGAAACAAATCAAAGAAAAGCCGCAAGTACATGGTAAAGGGACTA
ACCTACTCACGGGTATTATACGTTGTCCCCAGTGTGGCGCAGCCATGGCCGCTAGCAATACAACGAATACACTCAAAGAT
GGCACTAAGAAACGTATCCGTTACTATTCCTGTAGCAACTTTCGCAACAAAGGATCAAAGGTATGTTCAGCCAATAGTGT
TAGAGCTGATGTTATCGAAAAGTATGTTATGGATCAAATACTCGAAATAGTCAAAAGTGATAAAGTTATCAAACAAGTTG
TCGAACGTGTCAATCAAGAGAATAGAGTCGATGTAGCTGCGCTCAATCATGATATTGCTTATAAACAACAACAATTTGAT
GAAATTAACACTAAACTTAAAAATCTAGTTCAAACCATCGAAGACAATCCAGACTTAACATCTGCACTCAAACCAACCAT
TCATCAATATGAAACACAACTCAATGACATTACAAACCAAATGAATCAACTAAAGCAGCAACAAAATCAAGAGAAACCAT
CTTATGATACGAAACAAATCGCTGCCCTATTACAACGAATATTTCAAAATATAGAATCCATGGATAAATCACAACTCAAG
GCATTATACCTTACGGTCATTGACCGTATTGACATTCGTAAAGATGAGAATCATAAAAAGCAATTCTATGTCACACTCAA
GCTCAATAATGAGATTATTAAACAACTTTTCAATAATAAACAACTCGACGAAGTGCACCTCAGCACTTCGTTTTTATTTT
TGCCTCAAACTCTTTACCTTAAAATCTAA

Domains

Predicted by InterproScan.

Ogr/Delta-like zinc finger (Ogr_Delta)

(301-356)

Recombinase (Recombinase)

(180-279)

Resolvase, N terminal domain (Resolvase)

(11-155)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2K3YX49

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

84.502

100

0.845