Detailed information NTG0760292

Bioinformatically predicted

Overview

• Name: ccrB
• Type: Machinery gene
• Locus tag: OVY33_RS06525
• Genome accession: NZ_CP113107
• Coordinates: 1326938..1328566 (-)
• Length: 542 a.a.
• NCBI ID: WP_001186596.1
• Uniprot ID: -
• Organism: Staphylococcus rostri strain PJFA-333
• Function: promote SCCmec transfer (predicted from homology) Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
SCCmec	1308770..1329933	1326938..1328566	within	0

Gene organization within MGE regions

Location: 1308770..1329933

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OVY33_RS06430	mecA	1308770..1310779 (-)	2010	WP_063852655.1	PBP2a family beta-lactam-resistant peptidoglycan transpeptidase MecA	-
OVY33_RS06435	mecR1	1310876..1312633 (+)	1758	WP_309306387.1	beta-lactam sensor/signal transducer MecR1	-
OVY33_RS06440	mecI	1312633..1313004 (+)	372	WP_000369214.1	mecA-type methicillin resistance repressor MecI	-
OVY33_RS06445	psm-mec	1313089..1313157 (-)	69	WP_014532405.1	phenol-soluble modulin PSM-mec	-
OVY33_RS06450	-	1313516..1314625 (+)	1110	WP_309306790.1	ROK family transcriptional regulator	-
OVY33_RS06455	cstB	1314739..1316073 (-)	1335	Protein_1235	persulfide dioxygenase-sulfurtransferase CstB	-
OVY33_RS06460	-	1316106..1317170 (-)	1065	WP_309306388.1	DsrE/DsrF/DrsH-like family protein	-
OVY33_RS06465	cstR	1317306..1317566 (+)	261	WP_000220507.1	persulfide-sensing transcriptional repressor CstR	-
OVY33_RS06470	-	1317566..1318204 (+)	639	Protein_1238	sulfite exporter TauE/SafE family protein	-
OVY33_RS06475	-	1318478..1319095 (-)	618	WP_000562107.1	CadD family cadmium resistance transporter	-
OVY33_RS06480	-	1319176..1321590 (-)	2415	WP_000378485.1	cadmium-translocating P-type ATPase CadA	-
OVY33_RS06485	-	1321583..1321948 (-)	366	WP_000159127.1	metalloregulator ArsR/SmtB family transcription factor	-
OVY33_RS06490	-	1322186..1322563 (-)	378	WP_001041908.1	DUF6262 family protein	-
OVY33_RS06495	-	1322570..1324462 (-)	1893	WP_309306389.1	site-specific integrase	-
OVY33_RS06500	-	1324657..1324980 (-)	324	WP_000088091.1	JAB domain-containing protein	-
OVY33_RS06505	-	1324973..1325179 (-)	207	WP_001077283.1	hypothetical protein	-
OVY33_RS06510	-	1325181..1325702 (-)	522	WP_000836008.1	DUF1643 domain-containing protein	-
OVY33_RS06515	-	1325721..1326032 (-)	312	WP_000833212.1	DUF960 family protein	-
OVY33_RS06520	-	1326117..1326467 (-)	351	WP_000171449.1	SAUGI family uracil-DNA glycosylase inhibitor	-
OVY33_RS06525	ccrB	1326938..1328566 (-)	1629	WP_001186596.1	cassette chromosome recombinase CcrB	Machinery gene
OVY33_RS06530	ccrA	1328587..1329933 (-)	1347	WP_000816499.1	cassette chromosome recombinase CcrA	Machinery gene

Sequence

Protein

• Length: 542 a.a.
• Molecular weight: 62274.15 Da
• Isoelectric Point: 9.7334

>NTDB_id=760292 OVY33_RS06525 WP_001186596.1 1326938..1328566(-) (ccrB) [Staphylococcus rostri strain PJFA-333]
MQQLKQKRVGIYVRVSTEIQSTEGYSIDGQINQIREYCDFNNFVVVDVYADRGISGKSMNRPELQRLLKDANEGQIDSVM
VYKTNRLARNTSDLLKIVEDLHRQNVEFFSLSERMEVNTSSGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGN
LPLGYDKIPDSKHELMINQHEANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSIGSVTYILSNPFYVGKIQFAK
YKDWNEKRRKGLNDKPIIAEGKHSPIIIQDLWDKVQLRKKQVSQKPQVHGKGTNLLTGIVHCPQCGAPMAASNTTNTLKD
GTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQILEIVKSDKVINQVLERVNQENKVDIGALNHDIAYKQQQYD
EVSGKLHNLVKTIEDNPDLTSALKATIHQYETQLNDITNQMNQLKQQQNQEKLSYDTKQIAALLQRIFQNIESMDKAQLK
ALYLTVIDRIDIRKDGNHKKQFYVTLKLNNEIIKQLFNNTPLDEVLLSTSSLFLPQTLFLQI

Nucleotide

• Length: 1629 bp

>NTDB_id=760292 OVY33_RS06525 WP_001186596.1 1326938..1328566(-) (ccrB) [Staphylococcus rostri strain PJFA-333]
ATGCAACAACTCAAACAAAAACGTGTCGGTATCTATGTTCGTGTATCAACGGAAATCCAAAGTACTGAAGGCTATAGTAT
CGATGGACAAATCAATCAAATTCGAGAATATTGTGATTTCAATAACTTTGTTGTTGTAGATGTATACGCGGATAGAGGTA
TCTCTGGAAAATCTATGAACCGACCAGAACTACAACGTTTGTTAAAAGATGCGAACGAAGGTCAGATTGATTCTGTTATG
GTCTACAAAACAAACCGACTAGCACGTAACACTTCTGACTTACTCAAAATTGTTGAAGACCTTCATCGTCAAAATGTCGA
ATTCTTCAGCTTATCTGAGCGTATGGAAGTCAATACAAGCAGTGGTAAATTGATGCTACAAATTCTAGCGAGTTTTTCAG
AATTTGAAAGAAATAATATTGTCGAAAATGTATTCATGGGTCAAACCCGACGCGCTCAAGAAGGCTATTATCAAGGCAAT
TTGCCGCTGGGCTATGACAAAATACCGGATAGCAAGCATGAACTCATGATAAACCAACATGAAGCGAATATTGTCAAATA
TATATTTGAGTCATATGCTAAAGGCCACGGATATCGTAAAATTGCGAATGCACTCAATCACAAAGGATACGTGACTAAAA
AAGGAAAGCCTTTCAGTATTGGTTCAGTGACCTATATCTTATCTAATCCATTCTATGTTGGTAAAATTCAATTCGCAAAG
TACAAAGATTGGAATGAAAAGCGTCGTAAAGGGCTGAATGATAAACCAATAATAGCTGAAGGTAAGCATTCCCCTATTAT
TATTCAAGACTTATGGGATAAAGTCCAATTACGTAAAAAACAAGTCAGTCAAAAACCTCAAGTCCACGGTAAAGGAACTA
ATCTATTAACAGGTATCGTTCATTGTCCACAATGTGGTGCACCAATGGCAGCTAGTAACACAACGAACACATTGAAAGAT
GGTACCAAGAAGCGAATACGTTATTATTCTTGCAGTAACTTCCGAAACAAAGGCTCAAAAGTATGTTCTGCGAATAGCGT
TAGAGCTGATGTGATTGAGAAATACGTCATGGATCAAATACTCGAAATTGTCAAAAGTGATAAAGTCATTAACCAAGTCT
TAGAACGTGTCAATCAAGAAAATAAAGTCGATATTGGTGCATTGAACCACGATATCGCTTATAAACAACAACAATACGAT
GAAGTCAGCGGGAAACTCCATAATTTAGTTAAAACCATTGAAGATAATCCGGACCTAACATCTGCATTGAAAGCAACTAT
TCATCAATATGAAACACAACTCAATGACATTACAAATCAAATGAATCAACTCAAACAGCAACAAAATCAAGAGAAACTAT
CTTATGATACGAAACAAATCGCTGCCCTATTACAACGAATATTTCAAAATATAGAATCAATGGATAAAGCACAACTCAAA
GCATTATATCTTACAGTCATTGACCGTATTGATATTCGTAAAGACGGTAATCATAAAAAACAGTTCTACGTTACACTAAA
ACTCAATAATGAAATTATTAAACAACTTTTCAATAATACCCCTCTCGACGAAGTGCTCCTCAGCACTTCGTCTTTATTTT
TGCCTCAAACGCTCTTTCTTCAAATCTAA

Domains

Predicted by InterproScan.

• Resolvase, N terminal domain (Resolvase) (11-156)

• Recombinase (Recombinase) (180-280)

• Ogr/Delta-like zinc finger (Ogr_Delta) (301-356)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ccrB	Staphylococcus aureus N315	86.531	100	0.865