Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   OVY33_RS06170 Genome accession   NZ_CP113107
Coordinates   1250834..1251343 (-) Length   169 a.a.
NCBI ID   WP_103358372.1    Uniprot ID   A0A2K3YMV9
Organism   Staphylococcus rostri strain PJFA-333     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1245834..1256343
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OVY33_RS06150 - 1246365..1247933 (-) 1569 WP_309306377.1 IS1182 family transposase -
  OVY33_RS06155 - 1248112..1249503 (-) 1392 WP_103358370.1 MFS transporter -
  OVY33_RS06160 - 1249982..1250482 (+) 501 WP_103358371.1 hypothetical protein -
  OVY33_RS06165 rpsR 1250540..1250782 (-) 243 WP_014614919.1 30S ribosomal protein S18 -
  OVY33_RS06170 ssbA 1250834..1251343 (-) 510 WP_103358372.1 single-stranded DNA-binding protein Machinery gene
  OVY33_RS06175 rpsF 1251369..1251665 (-) 297 WP_044360075.1 30S ribosomal protein S6 -
  OVY33_RS06180 ychF 1251935..1253032 (-) 1098 WP_103358373.1 redox-regulated ATPase YchF -
  OVY33_RS06185 - 1253032..1253244 (-) 213 WP_103358422.1 DUF951 domain-containing protein -
  OVY33_RS06190 - 1253265..1254152 (-) 888 WP_103358374.1 mechanosensitive ion channel family protein -
  OVY33_RS06195 - 1254182..1254997 (-) 816 WP_103358375.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18744.46 Da        Isoelectric Point: 5.2149

>NTDB_id=760288 OVY33_RS06170 WP_103358372.1 1250834..1251343(-) (ssbA) [Staphylococcus rostri strain PJFA-333]
MINRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQAENVNNFLFKGSLAGVDGRLQSR
SYENQEGRRVYVTEVVCDSVQFLEPKSANQRHAQSSPNPGNDFQSYGQSFGGQQQGQNSSYQNNQPARNDNPFANANGPI
DISDDDLPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=760288 OVY33_RS06170 WP_103358372.1 1250834..1251343(-) (ssbA) [Staphylococcus rostri strain PJFA-333]
ATGATTAACAGAGTTGTATTAGTAGGTCGATTAACTAAAGATCCAGAATACAGAACGACACCCTCAGGCGTAAGTGTAGC
GACTTTTACTCTCGCAGTGAATCGTACGTTTACGAATGCGCAAGGGGAACGTGAAGCAGACTTTATTAACTGCGTTGTTT
TCCGTAAACAAGCTGAGAATGTTAATAATTTCTTATTCAAAGGTAGCCTTGCAGGTGTTGACGGTCGCTTACAGTCACGC
AGTTACGAAAACCAAGAAGGCCGACGCGTATATGTTACCGAAGTTGTTTGCGATAGTGTTCAATTCCTTGAGCCGAAATC
AGCAAATCAACGACACGCACAAAGCAGTCCGAACCCAGGAAATGACTTCCAAAGTTATGGACAAAGTTTCGGTGGACAAC
AGCAAGGTCAAAATTCGTCATATCAAAACAATCAGCCAGCACGTAATGACAACCCATTTGCGAATGCGAATGGACCAATT
GACATTAGTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2K3YMV9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

63.068

100

0.657
  ssb Latilactobacillus sakei subsp. sakei 23K

58.382

100

0.598
  ssbB Bacillus subtilis subsp. subtilis str. 168

61.321

62.722

0.385
  ssb Glaesserella parasuis strain SC1401

34.595

100

0.379